View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18437_low_6 (Length: 333)
Name: NF18437_low_6
Description: NF18437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18437_low_6 |
 | |
|
| [»] scaffold0043 (3 HSPs) |
| | |
|
| [»] scaffold1163 (1 HSPs) |
| | |
|
| [»] scaffold1142 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0043 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 30305 - 30612
Alignment:
| Q |
12 |
tcatcattgttttgattttgaatttacacatgttgttcagtttttctaaacgacgaggttgtcatgaatttacacatttaagatatcatttgtatattaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30305 |
tcatcatccttttgattttgaatttacacatgttgttcagtttctctaaacgacgaggttgtcatgaatttacacatttaagatatcatttgtatattaa |
30404 |
T |
|
| Q |
112 |
tttcaattgctaggaagatggtaatggaaaaatatgcataccctct-cttcaaatgtcaatataaagcctcctgctaccaaatatgttgatatttgagac |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30405 |
tttcaattgctaggaagatggtgatggaaaaatatgcataccctcttcttcaaatgtcaatataaagcctcctgctaccaaatatgttgatatttgagac |
30504 |
T |
|
| Q |
211 |
tcccaggaaagtattggtgagttttatttttctttaaattttaaggattcccctcccaccttctgattactttcttacattaaagtataatgcttccatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30505 |
tcccaggaaagtattggtgagttttatttttctttaaattttaaggattcccctcccaccttctgattactttcttacattaaagtataatgcttccatg |
30604 |
T |
|
| Q |
311 |
agagtaat |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
30605 |
agagtaat |
30612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 45163 - 45470
Alignment:
| Q |
12 |
tcatcattgttttgattttgaatttacacatgttgttcagtttttctaaacgacgaggttgtcatgaatttacacatttaagatatcatttgtatattaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45163 |
tcatcatccttttgattttgaatttacacatgttgttcagtttctctaaacgacgaggttgtcatgaatttacacatttaagatatcatttgtatattaa |
45262 |
T |
|
| Q |
112 |
tttcaattgctaggaagatggtaatggaaaaatatgcataccctct-cttcaaatgtcaatataaagcctcctgctaccaaatatgttgatatttgagac |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45263 |
tttcaattgctaggaagatggtgatggaaaaatatgcataccctcttcttcaaatgtcaatataaagcctcctgctaccaaatatgttgatatttgagac |
45362 |
T |
|
| Q |
211 |
tcccaggaaagtattggtgagttttatttttctttaaattttaaggattcccctcccaccttctgattactttcttacattaaagtataatgcttccatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45363 |
tcccaggaaagtattggtgagttttatttttctttaaattttaaggattcccctcccaccttctgattactttcttacattaaagtataatgcttccatg |
45462 |
T |
|
| Q |
311 |
agagtaat |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
45463 |
agagtaat |
45470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 51640 - 51419
Alignment:
| Q |
90 |
taagatatcatttgtatattaatttcaattgctaggaagatggtaatggaaaaatatgcataccctct-cttcaaatgtcaatataaagcctcctgctac |
188 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| ||||||||| ||||| || |
|
|
| T |
51640 |
taagatataatttgtttattaatttcaattgctaggaagtttgtgatggaaaaataagcataccctcttcttcagttgtcaatatg------cctgccac |
51547 |
T |
|
| Q |
189 |
caaatatgttgatatttgagactcccaggaaagtattggtgagttttatttt---tctttaaattttaaggattcccctcccaccttctgattactttct |
285 |
Q |
| |
|
|||| | ||||||||| ||||||||||||||| |||||||||| |||||||| |||| ||||| ||||| ||| ||||||||| | |||||||||| |
|
|
| T |
51546 |
caaagacgttgatattggagactcccaggaaactattggtgagatttatttttcttcttaaaattataaggtttctcctcccaccatgccattactttct |
51447 |
T |
|
| Q |
286 |
tacattaaagtataatgcttccatgaga |
313 |
Q |
| |
|
|| | |||| ||| ||||||||||||| |
|
|
| T |
51446 |
taaactaaacgatagtgcttccatgaga |
51419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 27388705 - 27388542
Alignment:
| Q |
157 |
tcttcaaatgtcaatataaagcctcctgctaccaaatatgttgatatttgagactcccaggaaagtattggtgagttttatttttctttaaattttaagg |
256 |
Q |
| |
|
||||||| |||||||| ||||| |||||| |||||||||||||||||| |||||||||| |||| |||||||||||||| |||| ||||||||||||| | |
|
|
| T |
27388705 |
tcttcaattgtcaatacaaagcttcctgccaccaaatatgttgatattggagactcccatgaaactattggtgagtttttttttcctttaaattttaatg |
27388606 |
T |
|
| Q |
257 |
attcccctcccaccttctgattactttcttacattaaagtataatgcttccatgagagtaatga |
320 |
Q |
| |
|
||| ||||||||||| || ||| ||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
27388605 |
cttctcctcccaccttgtgtttagtttcttaaattaaattataattcttccatgagagtaatga |
27388542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 19483203 - 19483051
Alignment:
| Q |
93 |
gatatcatttgtatattaatttcaattgctaggaagatggtaatggaaaaatatgcataccctc-tcttcaaatgtcaatataaagcctcctgctaccaa |
191 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||| |||||||| ||||| |||||| | || |
|
|
| T |
19483203 |
gatatcatttgtttattaatttcaattgctaggaagttggtgatggaaaaacatgcataccctcttcttcaattgtcaatacaaagcttcctgccaaaaa |
19483104 |
T |
|
| Q |
192 |
atatgttgatatttgagactcccaggaaagtattggtgagttttatttttctt |
244 |
Q |
| |
|
||||| ||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
19483103 |
atatgatgatattggagactcccataaaactattggtgagttttatttttctt |
19483051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 93 - 320
Target Start/End: Original strand, 28084950 - 28085183
Alignment:
| Q |
93 |
gatatcatttgtatattaatttcaattgctaggaagatggtaatggaaaaatatgcataccctctct-tcaaatgtcaata--taaagcctcctgctacc |
189 |
Q |
| |
|
||||| |||||| ||| |||||||||| ||||| || |||| |||| || ||||||| ||||||| | |||| |||||||| |||| ||||| || ||| |
|
|
| T |
28084950 |
gatataatttgtttataaatttcaatttctagggagttggtgatggcaatatatgcaaaccctctgtctcaattgtcaatacttaaatcctccagccacc |
28085049 |
T |
|
| Q |
190 |
aaatatgttgatatttgagactcccaggaaagtattggtgagttttattttt---ctttaaattttaaggattcccctcccaccttctgattactttctt |
286 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||| | ||| |||||| |
|
|
| T |
28085050 |
aaatatgttgatattggagactcttcggaaattattggtgagttttatttttattctttaaattttaaggtttctcctcccaccttgtttttagtttctt |
28085149 |
T |
|
| Q |
287 |
acattaaagtataatgcttccatgagagtaatga |
320 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||| |
|
|
| T |
28085150 |
aaattaaattataatacttccatgagagtaatga |
28085183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 27350134 - 27350269
Alignment:
| Q |
181 |
cctgctaccaaatatgttgatatttgagactcccaggaaagtattggtgagttttattt---ttctttaaattttaaggattcccctcccaccttctgat |
277 |
Q |
| |
|
||||| |||||| | ||||||||| ||||||||||||||| |||||||||| ||||||| ||||| ||||| ||||| ||| ||||||||| | || |
|
|
| T |
27350134 |
cctgccaccaaagacgttgatattggagactcccaggaaactattggtgagatttatttttcttcttaaaattataaggtttctcctcccaccatgccat |
27350233 |
T |
|
| Q |
278 |
tactttcttacattaaagtataatgcttccatgaga |
313 |
Q |
| |
|
|||||||||| | |||| ||| ||||||||||||| |
|
|
| T |
27350234 |
tactttcttaaactaaacgatagtgcttccatgaga |
27350269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 19474896 - 19474955
Alignment:
| Q |
21 |
ttttgattttgaatttacacatgttgttcagtttttctaaacgacgaggttgtcatgaat |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||| | | |||||||||| |
|
|
| T |
19474896 |
ttttgattttgaatttacacatgttgttcagtttctctaaatgacaatgctgtcatgaat |
19474955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 27379893 - 27380007
Alignment:
| Q |
96 |
atcatttgtatattaatttcaattgctaggaagatggtaatggaaaaatatgcataccctct-cttcaaatgtcaatataaagcctcctgctaccaaata |
194 |
Q |
| |
|
||||| ||| ||||||||| |||| ||||||| ||| |||| |||||||||||||||||| ||||| |||||||| | |||||||| | |||||| | |
|
|
| T |
27379893 |
atcatatgtttattaatttaaatttttaggaagtcggtcatggtaaaatatgcataccctctatttcaattgtcaatacagagcctcctcccaccaaaga |
27379992 |
T |
|
| Q |
195 |
tgttgatatttgaga |
209 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
27379993 |
cattgatattggaga |
27380007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 320
Target Start/End: Original strand, 22394862 - 22395093
Alignment:
| Q |
93 |
gatatcatttgtatattaatttcaattgctaggaagatggtaatggaaaaatatgcataccctct-cttcaaatgtcaatat---aaagcctcctgctac |
188 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| || | ||||||||| ||||||||||| | |||||| ||||||||| ||| | |||| | || |
|
|
| T |
22394862 |
gatataatttgtttattaatttcaattgctaggaagttgttgatggaaaaacatgcatacccttttcttcaattgtcaatattataaaccttccttccac |
22394961 |
T |
|
| Q |
189 |
caaatatgttgatatttgagactcccaggaaagtattggtgagttttatttttctttaaattttaaggattcccctcccaccttctgattactttcttac |
288 |
Q |
| |
|
||| |||||||||||| |||||||| | |||| | |||||||||||| |||| ||||||||||||| | ||| ||||||||||| || ||| ||||||| |
|
|
| T |
22394962 |
caattatgttgatattggagactcctatgaaacttttggtgagtttttttttcctttaaattttaatgtttctcctcccaccttgtgtttagtttcttaa |
22395061 |
T |
|
| Q |
289 |
attaaagtataatgcttccatgagagtaatga |
320 |
Q |
| |
|
|||| | |||||| |||||||||||||||||| |
|
|
| T |
22395062 |
attatattataattcttccatgagagtaatga |
22395093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 320
Target Start/End: Original strand, 266 - 497
Alignment:
| Q |
93 |
gatatcatttgtatattaatttcaattgctaggaagatggtaatggaaaaatatgcataccctct-cttcaaatgtcaatat---aaagcctcctgctac |
188 |
Q |
| |
|
||||| |||||| ||||||||||||||| ||||||| || | ||||||||| ||||||||| | | |||||| ||||||||| ||||| |||| | || |
|
|
| T |
266 |
gatataatttgtttattaatttcaattgataggaagttgttgatggaaaaacatgcataccgttttcttcaattgtcaatattataaagcttccttccac |
365 |
T |
|
| Q |
189 |
caaatatgttgatatttgagactcccaggaaagtattggtgagttttatttttctttaaattttaaggattcccctcccaccttctgattactttcttac |
288 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| | |||||||||||| | || ||||||||||||| | ||| ||||||||||| || ||| ||||||| |
|
|
| T |
366 |
caaatatgttgatattggagactcccatgaaacttttggtgagttttttcttcctttaaattttaatgtttctcctcccaccttgtgtttagtttcttaa |
465 |
T |
|
| Q |
289 |
attaaagtataatgcttccatgagagtaatga |
320 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |
|
|
| T |
466 |
attattttataattcttccatgagagtaatga |
497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 318
Target Start/End: Complemental strand, 6165077 - 6164853
Alignment:
| Q |
99 |
atttgtatattaatttcaattgctaggaagatggtaatggaaaaa-tatgcataccctctcttcaaatgtcaatataaagcctcctgctaccaaatatgt |
197 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| |||| ||| ||||| |||||||||| |||||||| || |||||||||| |||||| |||| |||||| |
|
|
| T |
6165077 |
atttgtttataaatttgaattgctaggaagttggtgatgaaaaaaatatgcatacctcttcttcaaacgttaatataaagcttcctgccaccagatatgt |
6164978 |
T |
|
| Q |
198 |
tgatatttgagactcccaggaaagtattggtgagttttattt----ttctttaaattttaaggattcccctcccaccttctgattactttcttacattaa |
293 |
Q |
| |
|
||| ||| | ||||| || | || ||||||| |||||||||| |||| |||||||||||| ||| |||||||| || || ||| ||||||| |||| |
|
|
| T |
6164977 |
tgaaattggcgactcgcaaggaactattggtaagttttattttttcttctctaaattttaaggtttctcctcccactttgtgtttagtttcttaacttaa |
6164878 |
T |
|
| Q |
294 |
agtataatgcttccatgagagtaat |
318 |
Q |
| |
|
| ||||| ||| ||||||||||| |
|
|
| T |
6164877 |
atcataattattctatgagagtaat |
6164853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 6163806 - 6163905
Alignment:
| Q |
222 |
tattggtgagttttatttttctt---taaattttaaggattcccctcccaccttctgattactttcttacattaaagtataatgcttccatgagagtaat |
318 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||| |||||||| || | ||| ||||||| ||||| |||||| ||||||||| |||||| |
|
|
| T |
6163806 |
tatttgtgagttttatttttcttctctaaattttaaggtttctcctcccactttgcgtttagtttcttaacttaaattataattcttccatgacagtaat |
6163905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1142 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 504 - 561
Alignment:
| Q |
22 |
tttgattttgaatttacacatgttgttcagtttttctaaacgacgaggttgtcatgaa |
79 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
504 |
tttgattctgaatttacacatgttgttcagttcctctaaatgacgatgttgtcatgaa |
561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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