View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18438_high_3 (Length: 518)
Name: NF18438_high_3
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Original strand, 48411312 - 48411794
Alignment:
| Q |
20 |
ctatttacaacgtgaatttaataataagagtaacaattaaacacnnnnnnnnnnnnnnnngatgcaagcattgcgtaccttagaaacaagatgaaacgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411312 |
ctatttacaacgtgaatttaataataagagtaacaattaaacacaaaaaataaaataaaagatgcaagcattgcgtaccttagaaacaagatgaaacgaa |
48411411 |
T |
|
| Q |
120 |
taaagaagaaactccaaagtctctctagcggaagcagcttgagatttcagcttcaaaccattgttaatagcaaaaagagaaatatcagcagaatctctaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
48411412 |
taaagaagaaactccaaagtctctctagcggaagcagcttgagatttctgcttcaaaccattgttaatagaaaaaagagaaacatcagcagaatctctaa |
48411511 |
T |
|
| Q |
220 |
actgctgaatattctcgcgcagctccacaagcgggtaccacaacatcatccacatcaacaatgtttgcagtaagattagcgaaatcagagtaatcgcgat |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411512 |
actgctgaatattctcccgcagctccacaagcgggtaccacaacatcatccacatcaacaatgtttgcagtaagattagcgaaatcagagtaatcgcgat |
48411611 |
T |
|
| Q |
320 |
tgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagtgtggaagggaacgaaggttggaagttgagagatgtg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411612 |
tgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagtgtggaagggaacgaaggttggaagttgagagatgta |
48411711 |
T |
|
| Q |
420 |
tgattcggaatcgaagttaggggagaggaacggttcgggtttgaaccagagagggtcggagaagaggttcgtgacggttctgt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411712 |
tgattcggaatcgaagttaggggagaggaacggttcgggtttgaaccagagagggtcggagaagaggttcgtgacggttctgt |
48411794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 95 - 449
Target Start/End: Complemental strand, 42825049 - 42824684
Alignment:
| Q |
95 |
taccttagaaacaagatgaaacgaataaagaagaaactccaaagtctctctagcggaagcagcttgagatttcagcttcaaaccattgttaatagcaaaa |
194 |
Q |
| |
|
|||||| ||||||| |||||| | || |||||||| ||||||||||||||| || |||||||||| |||| ||||||||||||| || ||||||| | |
|
|
| T |
42825049 |
taccttggaaacaacatgaaatgtatcaagaagaagctccaaagtctctctggcagaagcagcttcagatcgttgcttcaaaccattctttatagcaaca |
42824950 |
T |
|
| Q |
195 |
agagaaatatcagcagaatctctaaactgctgaatattctcgcgcagctccacaagcgg-----------gtaccacaacatcatccacatcaacaatgt |
283 |
Q |
| |
|
|| |||| ||| ||||| |||||||||| | ||| ||||| | || ||| |||||||| | ||||| | ||||||||||||||| | |
|
|
| T |
42824949 |
agcgaaacgtcaacagaacctctaaactgttcaatcttctccctcaactcaacaagcggcgcccgcatccgcaccaccgccgcatccacatcaacaagct |
42824850 |
T |
|
| Q |
284 |
ttgcagtaagattagcgaaatcagagtaatcgcgattgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagt |
383 |
Q |
| |
|
| | | | | |||| ||||||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||||||||||| || |||||||| |
|
|
| T |
42824849 |
tcgtactcaaattaacgaaatcagcataatcgcgattgattagatcaatgagctcgtgatttagcgacgagagatagttgttgagttccgatcggagagt |
42824750 |
T |
|
| Q |
384 |
gtggaagggaacgaaggttggaagttgagagatgtgtgattcggaatcgaagttaggggagaggaa |
449 |
Q |
| |
|
|| ||| || ||||||||| | |||| || |||| |||||||||||||||| |||||||||||| |
|
|
| T |
42824749 |
gtcgaatgggacgaaggttcggagttcggaaatgtaggattcggaatcgaagtcaggggagaggaa |
42824684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University