View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18438_low_1 (Length: 628)

Name: NF18438_low_1
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18438_low_1
NF18438_low_1
[»] chr8 (1 HSPs)
chr8 (18-628)||(43034890-43035499)
[»] chr6 (1 HSPs)
chr6 (385-498)||(34193771-34193884)


Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Complemental strand, 43035499 - 43034890
Alignment:
Q  18 cacaccgaaaatacaagagtctgattctcctgtcacagtttaacaatttcattatgttgttacactcgagaggcatttggatacatagcttaataaaaca 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43035499 cacaccgaaaatacaagagtctgattctcctggcacagtttaacaatttcattatgttgttacactcgagaggcatttggatacatagcttaataaaaca 43035400  T
Q  118 cttactcaaaaacacttctatacttatgtgtaagttgtttctacaaccaaagcttataataagctatctatagaatatcatgcttgttacttaataagct 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43035399 gttactcaaaaacacttctatacttatgtgtaagttgtttctacaaccaaagcttataataagctatctatagaatatcatgcttgttacttaataagct 43035300  T
Q  218 atctatagaagatcatgcttgttacttcaatcaattaaatgnnnnnnnnatattttattaaccaacttgaaaattcaggcctctttcgtcggattctaca 317  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43035299 atctatagaagatcatgcttgttacttcaatcaattaaatgttttttt-atattttattaaccaacttgaaaattcaggcctctttcgtcggattctaca 43035201  T
Q  318 aacaataattcaagcagatggagaagaccattgagaggtgaaagagaacagtggacaagggaatgagagaaagggttggatgatagtaattcacgatcta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43035200 aacaataattcaagcagatggagaagaccattgagaggtgaaagagaacagcggacaagggaatgagagaaagggttggatgatagtaattcacgatcta 43035101  T
Q  418 tcaggctcgcccgttgctgcagcatccatgatcacaccatttgttccatcccccggctcagatcgggtgtcacgatcaaacgcaggcgcgtgggttattc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43035100 tcaggctcgcccgttgctgcagcatccatgatcacaccatttgttccatcccccagctcagatcgggtgtcacgatcaaacgcaggcgcgtgggttattc 43035001  T
Q  518 tccgctcaattggaggctccactgtgagtagctgtagctggaaatcatggggtcgtctcgaggcatggtgagagagaggtcctatcgatggcttgggcta 617  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  43035000 tccgcgcgatcggaggctccactgtgagtagctgtagctggaaatcatggggtcatctcgaggcatggcgagagagaggtcctatcgatggcttgggcta 43034901  T
Q  618 caagatagagc 628  Q
    |||| ||||||    
T  43034900 caaggtagagc 43034890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 34193771 - 34193884
Alignment:
Q  385 agaaagggttggatgatagtaattcacgatctatcaggctcgcccgttgctgcagcatccatgatcacaccatttgttccatcccccggctcagatcggg 484  Q
    ||||||||||||||||||  | |||||||||| || || || || ||||||||||| || ||| ||||||||||||| || ||||| ||||||||| | |    
T  34193771 agaaagggttggatgataacagttcacgatctctcgggttccccggttgctgcagcctcaatggtcacaccatttgtcccttcccctggctcagatagag 34193870  T
Q  485 tgtcacgatcaaac 498  Q
    | ||| ||||||||    
T  34193871 tatcaagatcaaac 34193884  T

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