View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18438_low_11 (Length: 299)
Name: NF18438_low_11
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 110 - 280
Target Start/End: Complemental strand, 29841911 - 29841741
Alignment:
| Q |
110 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttctttacacactttgcgcttgtattatacttgt |
209 |
Q |
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| T |
29841911 |
gatgatcaacattccgaatatttcattcaatcacaaaaccacctcttcgtgaaaatacataggtttttctttacacactttgtgcttgtattatacttgt |
29841812 |
T |
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| Q |
210 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatcaatgatgt |
280 |
Q |
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| T |
29841811 |
ttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatgaatgatgt |
29841741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 280
Target Start/End: Original strand, 29829573 - 29829745
Alignment:
| Q |
110 |
gatgatcaacattccgaatattccattcaatcacaaaaccacctcttagtgaaaatacataggtttttcttt--acacactttgcgcttgtattatactt |
207 |
Q |
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| T |
29829573 |
gatgatcaacattctgaatattccattcaaccacaaaaccaactcttggtgaaaatacataggtttttttttccacacactttgtgcttgtattatactt |
29829672 |
T |
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| Q |
208 |
gtttcgctacaattcacaagtcaattttacacacaaccacttgcaaaaattctgtatactaaatcaatgatgt |
280 |
Q |
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| T |
29829673 |
gtttcaccccaatgcacaggtcaattttacacacaaccacttgcaaaaattctgtatattaaatgaatgatgt |
29829745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 29842054 - 29841964
Alignment:
| Q |
22 |
tgaatggctccatgcagaggttaggtatatgaaatcaattcatataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
112 |
Q |
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| T |
29842054 |
tgaatggctccatgcagaggttaggtatatgaaatcaattcgtataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
29841964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 29829447 - 29829509
Alignment:
| Q |
50 |
atgaaatcaattcatataaaaagcggaatccatgtactcaatcacaaaagtagcttggaggat |
112 |
Q |
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| T |
29829447 |
atgaaatcaattcgtataaaaagcggaatcaatgtactcaatcacaaaagtagcttggaggat |
29829509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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