View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18438_low_14 (Length: 228)

Name: NF18438_low_14
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18438_low_14
NF18438_low_14
[»] chr3 (6 HSPs)
chr3 (11-212)||(50865265-50865477)
chr3 (138-212)||(50810386-50810460)
chr3 (11-82)||(50810528-50810599)
chr3 (11-79)||(42593012-42593080)
chr3 (11-79)||(41264111-41264179)
chr3 (146-212)||(34877423-34877489)
[»] chr8 (1 HSPs)
chr8 (11-212)||(28419745-28419949)
[»] chr6 (2 HSPs)
chr6 (138-212)||(233121-233195)
chr6 (11-127)||(233220-233334)
[»] chr2 (2 HSPs)
chr2 (11-79)||(1084623-1084691)
chr2 (14-83)||(6031165-6031234)
[»] chr4 (2 HSPs)
chr4 (11-60)||(23203547-23203596)
chr4 (14-53)||(44492783-44492822)
[»] chr7 (1 HSPs)
chr7 (11-72)||(32255951-32256012)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 50865265 - 50865477
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaactacaacnnnnnnnnnnntccaaaacaattcatc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||           ||||||| |||| |||    
T  50865265 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctccatctgttctcaaacaacaacaaaaaaaaaaatccaaaaaaatttatc 50865364  T
Q  111 ttctccatcttaactttnnnnnnnnnn-----------ctttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagaacaagt 199  Q
    ||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50865365 ttctccatcttaacttaaaaaaaaaaaaaaaaaacaaactttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagagcaagt 50865464  T
Q  200 gaagacatgattc 212  Q
    |||||||||||||    
T  50865465 gaagacatgattc 50865477  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 50810460 - 50810386
Alignment:
Q  138 ctttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagaacaagtgaagacatgattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50810460 ctttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagagcaagtgaagacatgattc 50810386  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 50810599 - 50810528
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaactacaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  50810599 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctccatctgttctcaaacaacaa 50810528  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 42593012 - 42593080
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaacta 79  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  42593012 catcaacaaacacaaaatcaaaccaaaatctatccattctcatcatcatctccatctgttctcaaacta 42593080  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 41264111 - 41264179
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaacta 79  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| || |||||||||||||    
T  41264111 catcaacaaacacaaaatcaaaccaaaatctatccattctcatcatcatctccatatgttctcaaacta 41264179  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 34877489 - 34877423
Alignment:
Q  146 gaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagaacaagtgaagacatgattc 212  Q
    |||||||||||| ||||||||||||||||||||  |||||||||| ||  || |||| |||||||||    
T  34877489 gaaggacaagaacagcgctaatcaaagcttcatcaggttcattcacgagtaaatgaacacatgattc 34877423  T

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Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 28419949 - 28419745
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaactacaacnnnnnnnnnnntccaaaacaattcatc 110  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||| |||||           ||||||| ||||||||    
T  28419949 catcaataaacacaaaatcaaaccaaaatccatccgttctcatcatcatctccatatgttctcaaacaacaacaaaaaaaaa--tccaaaaaaattcatc 28419852  T
Q  111 ttctccatcttaactt-----tnnnnnnnnnnctttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagaacaagtgaagac 205  Q
    ||||||||||| || |     |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28419851 ttctccatcttcacctcaaaataaaaaacaaactttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagagcaagtgaagac 28419752  T
Q  206 atgattc 212  Q
    |||||||    
T  28419751 atgattc 28419745  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 233195 - 233121
Alignment:
Q  138 ctttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagaacaagtgaagacatgattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  233195 ctttgtgtgaaggacaagaatagcgctaatcaaagcttcattgggttcattcaagagcaagtgaagacatgattc 233121  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 233334 - 233220
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaactacaacnnnnnnnnnnntccaaaacaattcatc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||           ||||||| ||||||||    
T  233334 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctccatctgttctcaaacaacaac--aaaaaaaaatccaaaaaaattcatc 233237  T
Q  111 ttctccatcttaacttt 127  Q
    |||||||||||||||||    
T  233236 ttctccatcttaacttt 233220  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 1084623 - 1084691
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaacta 79  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  1084623 catcaacaaacacaaaatcaaaccaaaatccatccattctcatcatcatctccatctgttctcaaacta 1084691  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 6031234 - 6031165
Alignment:
Q  14 caacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttctcaaactacaac 83  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||| |||| | |||| |||||| |||||    
T  6031234 caactaacacaaaatcaaacgaaaattcattcattctcatcatcacctctctttgttttcaaacaacaac 6031165  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 23203596 - 23203547
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatc 60  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23203596 catcaacaaacacaaaatcaaaccaaaatccatccattctcatcatcatc 23203547  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 44492822 - 44492783
Alignment:
Q  14 caacaaacacaaaatcaaaccaaaattcatccattctcat 53  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  44492822 caacaaacacaaaatcaaaccaaaattcatcaattctcat 44492783  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 32256012 - 32255951
Alignment:
Q  11 catcaacaaacacaaaatcaaaccaaaattcatccattctcatcatcatctctatctgttct 72  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||||||||| || ||||||    
T  32256012 catcaacaaacacaaaatcaaaccaaaatccatatattctcatcatcatctccatttgttct 32255951  T

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