View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18438_low_2 (Length: 578)
Name: NF18438_low_2
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 33081228 - 33081784
Alignment:
| Q |
1 |
aattggtttaccaatttcatgtatccttggatttaagaccgatttgatatataaggtaaaagagttatttcactaatcataatttaaatatgttgtcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33081228 |
aattggtttaccaatttcatgtatccttggatttaagaccaatttgaaatataaggtaaaagagttatttcacaaatcataatttaaatatgttgtcatt |
33081327 |
T |
|
| Q |
101 |
ttatagataaaatcttaatggtcaatttattagcagcaggaactgaaccctgaacctcatccttaatactctttattttgtattcnnnnnnnaatcattg |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
33081328 |
ttatagataaaatgttaatggtcaatttattagcagcaggaactgaacc-------tcatccgtaatactctttattttgtattctttttttaatcattg |
33081420 |
T |
|
| Q |
201 |
tgctttttaat-atgatatagggtttatgtattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcgaaatgga |
299 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33081421 |
tgttttttaattatgatatagggtttatggattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgccaaatgga |
33081520 |
T |
|
| Q |
300 |
ctaaactgaatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaattaggactgaataagcttgtgtttggaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33081521 |
ctaaactgaatctctcaggagacaaagataaagatcaacctgttgttgttttaacgactgaatgcatgccaattaggactgaataagcttgtgtttggaa |
33081620 |
T |
|
| Q |
400 |
ccacagtgacagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33081621 |
ccacagtgacagctcctttagatgcacggcttgagcgaaactataacttggagccttagactcaatgtgcggagaaaactctttgaatgtgaaagcaaaa |
33081720 |
T |
|
| Q |
500 |
acaggctaaaaaatgattacaggttgtaaataacatgattttcctatctaaaaacgttcattgt |
563 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33081721 |
acaggctaaaaaattattagaggttgtaaataacatgattttcctatctaaaaacgttccttgt |
33081784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 2 - 557
Target Start/End: Original strand, 33071537 - 33072074
Alignment:
| Q |
2 |
attggtttaccaatttcatgtatccttggatttaagaccgatttgatatataaggtaaaagagttatttcactaa-tcataatttaaatatgttgtcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
33071537 |
attggtttaccaatttcatgtatccttggatttaagaccaatttgcaatataaggtaaaaaaattatttcacaaaatcacaatttaaatatgttgtcatt |
33071636 |
T |
|
| Q |
101 |
ttatagataaaatcttaatggtcaatttattagcagcaggaactgaaccctgaacctcatccttaatactctttattttgtattcnnnnnnnaatcattg |
200 |
Q |
| |
|
||| | ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
33071637 |
ttacaaataaaatgttaatggtcaatttattagcagtaggaact-------------------taatactctttattttgtattctttttttaatcattg |
33071717 |
T |
|
| Q |
201 |
tgctttttaat-atgatatagggtttatgtattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcgaaatgga |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33071718 |
tgctttttaattatgatatagggtttatggattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcaaaatgga |
33071817 |
T |
|
| Q |
300 |
ctaaactgaatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaattaggactgaataagcttgtgtttggaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071818 |
ctaaactgaatctctcaggagacaaagataaagatcaacctgttgttgttttaacgactgaatgcatgccaattaggactgaataagcttgtgtttggaa |
33071917 |
T |
|
| Q |
400 |
ccacagtgacagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaaa |
499 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||||| |||| || |
|
|
| T |
33071918 |
ccacagtgacagctccttt-gatgcacggcgtgagcgaaactataacttggagctttagactcaacgtgtggagaaaactctttgtatgtggaagctaac |
33072016 |
T |
|
| Q |
500 |
acaggctaaaaaatgattacaggttgtaaataacatgattttcctatctaaaaacgtt |
557 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33072017 |
acaggctaaaaaatggttacatgttgtaattaacatgattttcctatctaaaaacgtt |
33072074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 125 - 373
Target Start/End: Original strand, 33090020 - 33090262
Alignment:
| Q |
125 |
atttattagcagcaggaactgaaccctgaacctcatccttaatactctttattttgtattcnnnnnnnaatcattgtgctttttaat-atgatatagggt |
223 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||| | |||||||||| || | ||| ||| | |||||| |
|
|
| T |
33090020 |
atttattagcagtagggactgaaccatgaacctcattcttaatactctttattttgtaat-------taatcattgtgtttatgaattatgttttagggt |
33090112 |
T |
|
| Q |
224 |
ttatgtattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcgaaatggactaaactgaatctctcaggagaca |
323 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33090113 |
ttatggattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgccaaatggactaaactgaatctctcaggagaca |
33090212 |
T |
|
| Q |
324 |
aagataaagatcaacctgttgttgttttaacaactgaatgcatgccaatt |
373 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33090213 |
aaggtaaagatcaacctgttgttgttttaacaactgaatgcatgccaatt |
33090262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 125 - 373
Target Start/End: Original strand, 33097516 - 33097758
Alignment:
| Q |
125 |
atttattagcagcaggaactgaaccctgaacctcatccttaatactctttattttgtattcnnnnnnnaatcattgtgctttttaat-atgatatagggt |
223 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||| | |||||||||| || | ||| ||| | |||||| |
|
|
| T |
33097516 |
atttattagcagtagggactgaaccatgaacctcattcttaatactctttattttgtaat-------taatcattgtgtttatgaattatgttttagggt |
33097608 |
T |
|
| Q |
224 |
ttatgtattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcgaaatggactaaactgaatctctcaggagaca |
323 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33097609 |
ttatggattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgccaaatggactaaactgaatctctcaggagaca |
33097708 |
T |
|
| Q |
324 |
aagataaagatcaacctgttgttgttttaacaactgaatgcatgccaatt |
373 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33097709 |
aaggtaaagatcaacctgttgttgttttaacaactgaatgcatgccaatt |
33097758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 211 - 440
Target Start/End: Original strand, 33064486 - 33064714
Alignment:
| Q |
211 |
tatgatatagggtttatgtattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcgaaatggactaaactgaat |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
33064486 |
tatgatatagggtttatggattggtctgatatgtggattggtatgtcaaactggggcactcttgcttttgacaaggcatgtcaaatggactaaactgaat |
33064585 |
T |
|
| Q |
311 |
ctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaattaggactgaataagcttgtgtttggaaccacagtgaca |
410 |
Q |
| |
|
||||| || ||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| ||| || |
|
|
| T |
33064586 |
ctctcgggcgacaaagataaaggccaaccaattgttg-tttaacaacttaatgcctgccaattaggactatataagtttgtgtttggaaccaccgtggca |
33064684 |
T |
|
| Q |
411 |
gctcctttagatgcacggcatgagcgaaac |
440 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |
|
|
| T |
33064685 |
gctcatttagatgcacggtgtgagcgaaac |
33064714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 211 - 360
Target Start/End: Original strand, 33050246 - 33050394
Alignment:
| Q |
211 |
tatgatatagggtttatgtattggtctgatttgtgggctggcatgtcaaactgggacactcttacttttgacaagatatgcgaaatggactaaactgaat |
310 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||| |
|
|
| T |
33050246 |
tatgatatagggtttatggattggtctgatttgtgggctggtgtgtcaaattgggacactcttacttttgacaaggcatgccaaatggactaaacttaat |
33050345 |
T |
|
| Q |
311 |
ctctcaggagacaaagataaagatcaacctgttgttgttttaacaactga |
360 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
33050346 |
ctctcaggggacaaagataaagaccaacctattgttg-tttaacaactga |
33050394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 33089877 - 33089998
Alignment:
| Q |
2 |
attggtttaccaatttcatgtatccttggatttaagaccgatttgatatataaggtaaaaga-gttatttcac-taatcataatttaaatatgttgtcat |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| ||||| ||| ||||||||||| || |||||| ||| ||||| ||||| ||||||| | |
|
|
| T |
33089877 |
attggtttacccatttcatgtctccttggatttaagaccaatttggaatacaaggtaaaagattttttttcacaaaattataatgtaaatgtgttgtctt |
33089976 |
T |
|
| Q |
100 |
tttatagataaaatcttaatggt |
122 |
Q |
| |
|
||||||||| |||| |||||||| |
|
|
| T |
33089977 |
tttatagat-aaatgttaatggt |
33089998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 33097373 - 33097494
Alignment:
| Q |
2 |
attggtttaccaatttcatgtatccttggatttaagaccgatttgatatataaggtaaaaga-gttatttcac-taatcataatttaaatatgttgtcat |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| ||||| ||| ||||||||||| || |||||| ||| ||||| ||||| ||||||| | |
|
|
| T |
33097373 |
attggtttacccatttcatgtctccttggatttaagaccaatttggaatacaaggtaaaagattttttttcacaaaattataatgtaaatgtgttgtctt |
33097472 |
T |
|
| Q |
100 |
tttatagataaaatcttaatggt |
122 |
Q |
| |
|
||||||||| |||| |||||||| |
|
|
| T |
33097473 |
tttatagat-aaatgttaatggt |
33097494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 33063787 - 33063846
Alignment:
| Q |
2 |
attggtttaccaatttcatgtatccttggatttaagaccgatttgatatataaggtaaaa |
61 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
33063787 |
attggtttaccaatttcatgtctccttggatttaagaccaatttgcagtataaggtaaaa |
33063846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 33049818 - 33049862
Alignment:
| Q |
2 |
attggtttaccaatttcatgtatccttggatttaagaccgatttg |
46 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
33049818 |
attggtttaccaatttcatatctccttggatttaagaccaatttg |
33049862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 33090265 - 33090354
Alignment:
| Q |
407 |
gacagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaa |
498 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||| |||| ||| ||||| | | ||||||||||||||||||||| ||||||| |
|
|
| T |
33090265 |
gacagctcctttagatgcagtg--tgagcgaaactataactcggagctttaaactcagctttcggagaaaactctttgaatgtcgaagcaaa |
33090354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 33097761 - 33097850
Alignment:
| Q |
407 |
gacagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaa |
498 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||| |||| ||| ||||| | | ||||||||||||||||||||| ||||||| |
|
|
| T |
33097761 |
gacagctcctttagatgcagtg--tgagcgaaactataactcggagctttaaactcagctttcggagaaaactctttgaatgtcgaagcaaa |
33097850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 18487228 - 18487325
Alignment:
| Q |
253 |
atgtcaaactgggacactcttacttttgacaagatatgcgaaatggactaaactgaatctctcaggagacaaagataaagatcaacctgttgttgttt |
350 |
Q |
| |
|
|||||||| | ||||| ||||| |||||||||| |||| |||||||||||||| ||||| |||| |||||||||||||| |||||| || |||||| |
|
|
| T |
18487228 |
atgtcaaattaggacaatcttatttttgacaaggcatgccaaatggactaaacttaatctatcagtggacaaagataaagaccaacctattattgttt |
18487325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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