View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18438_low_5 (Length: 445)
Name: NF18438_low_5
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 83 - 425
Target Start/End: Original strand, 41653385 - 41653732
Alignment:
| Q |
83 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttt |
182 |
Q |
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| T |
41653385 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaagttgtgacaagcaggtcaagatgtggccacttt |
41653484 |
T |
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| Q |
183 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
282 |
Q |
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| T |
41653485 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccatcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
41653584 |
T |
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| Q |
283 |
caaaaccattaagtatgcatattcattctttttatt---------------cgtccaaagagtcttgggtcatttcacaaattattttgtgtttattagg |
367 |
Q |
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| T |
41653585 |
caaaaccattaagcatgcatattcattcttttcattcagttaccgtacgtacgtctaaagagtattgggtc----------ttattttatgtttgttagg |
41653674 |
T |
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| Q |
368 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgct |
425 |
Q |
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| T |
41653675 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgct |
41653732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 41653350 - 41653381
Alignment:
| Q |
19 |
gtatctacattgttgttattgttgtacttaat |
50 |
Q |
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| T |
41653350 |
gtatctacattgttgttattgttgtacttaat |
41653381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 94 - 319
Target Start/End: Complemental strand, 28819847 - 28819622
Alignment:
| Q |
94 |
gttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggaggg |
193 |
Q |
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|||| ||||||||||||| |||||||| ||||||||||| || || ||| | ||||||||||| ||||||| ||||||||||| ||||| ||||||||| |
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| T |
28819847 |
gttgaaggttttgtgctcagcttggaaagatgatggaacgacagtgttttctggaggttgtgataagcaggctaagatgtggccgcttttgtctggaggg |
28819748 |
T |
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| Q |
194 |
caaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaaaaccatta |
293 |
Q |
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| T |
28819747 |
caaccggtgactgttgctatgcatgatgctcccattaaagagattgcatggataccggagatgagtcttttagccactggaagcttggacaaaactgtaa |
28819648 |
T |
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| Q |
294 |
agtatgcatattcattctttttattc |
319 |
Q |
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|||||||| || ||||||||||||| |
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| T |
28819647 |
agtatgcaattttattctttttattc |
28819622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 28818183 - 28818127
Alignment:
| Q |
363 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatc |
419 |
Q |
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| T |
28818183 |
ttaggtattgggatactaggcaatccaacccagtgcatactcaacaactccctgatc |
28818127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 98 - 285
Target Start/End: Complemental strand, 1464337 - 1464150
Alignment:
| Q |
98 |
taggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggagggcaac |
197 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| || | || || ||||||||||| || || |||||||| || || |||||||| |||| |
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| T |
1464337 |
taggttttgtgctctgcttggaaggatgatggcacaactgtcttctctggtggatgtgacaagcaagttaaaatgtggcctctgttgtctggaggacaac |
1464238 |
T |
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| Q |
198 |
cgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaa |
285 |
Q |
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| T |
1464237 |
caattactgtagccatgcacgatgcacctatcaaagatattgcttggattcccgagatgaaccttttagccacaggaagctgggacaa |
1464150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 1463665 - 1463614
Alignment:
| Q |
363 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccc |
414 |
Q |
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| T |
1463665 |
ttaggtattgggatacaaggcagccaaatccagtgcacacacaacaactccc |
1463614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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