View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18438_low_6 (Length: 439)
Name: NF18438_low_6
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 33683734 - 33683364
Alignment:
| Q |
13 |
aatatcggaatgcactacgttcagtacatgcttttctttcatcttcaattcagacttgaaagctaacctagaacgcttccctactaagcatatgctacat |
112 |
Q |
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|||||| |||||||| || ||||||||||||||| || |||||||||||||||||||||||| | || ||||| |||||||||||| ||||||||||||| |
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| T |
33683734 |
aatatcagaatgcacaacattcagtacatgctttgctctcatcttcaattcagacttgaaagttgacatagaatgcttccctactatgcatatgctacat |
33683635 |
T |
|
| Q |
113 |
aatttttcagagatcttcacatttagctccccattcaccatattcttagatttcagtagacataagcttatatatttcaagtgtccata--ccttttgtg |
210 |
Q |
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||| ||||| |||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||||||| |||| ||||||||| |
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| T |
33683634 |
gattgttcagggatcttcacatttaactccccaatcaccatattcttatattttagtagacataagcttctatagttcaagtgtacatataccttttgtg |
33683535 |
T |
|
| Q |
211 |
ccaaagttcagattcatcatctttcactgaagctttataacacatttcctccttagtcactatgctggttttgaaagttctattctttttaagatttgat |
310 |
Q |
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|||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
33683534 |
ccaaagttcagattcatcatctttcactaaagctttataggaaatttcctccttaatcactatgttggttttgaaagttctattctttgtaagatttgac |
33683435 |
T |
|
| Q |
311 |
tgcagtgtaagcttcttttctagactgtacaacttcaaggtatcattctccattcttactaaataaccttt |
381 |
Q |
| |
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|| ||| |||||||||||||| || |||||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
33683434 |
tgaagtataagcttcttttctggattgtacagcttcaaggtatcattctccattgttactgaataaccttt |
33683364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 33700788 - 33700418
Alignment:
| Q |
13 |
aatatcggaatgcactacgttcagtacatgcttttctttcatcttcaattcagacttgaaagctaacctagaacgcttccctactaagcatatgctacat |
112 |
Q |
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|||||| |||||||| || ||||||||||||||| || |||||||||||||||||||||||| | || ||||| |||||||||||| ||||||||||||| |
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| T |
33700788 |
aatatcagaatgcacaacattcagtacatgctttgctctcatcttcaattcagacttgaaagttgacatagaatgcttccctactatgcatatgctacat |
33700689 |
T |
|
| Q |
113 |
aatttttcagagatcttcacatttagctccccattcaccatattcttagatttcagtagacataagcttatatatttcaagtgtccata--ccttttgtg |
210 |
Q |
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||| ||||| |||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||||||| |||| ||||||||| |
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| T |
33700688 |
gattgttcagggatcttcacatttaactccccaatcaccatattcttatattttagtagacataagcttctatagttcaagtgtacatataccttttgtg |
33700589 |
T |
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| Q |
211 |
ccaaagttcagattcatcatctttcactgaagctttataacacatttcctccttagtcactatgctggttttgaaagttctattctttttaagatttgat |
310 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
33700588 |
ccaaagttcagattcatcatctttcactaaagctttataggaaatttcctccttaatcactatgttggttttgaaagttctattctttgtaagatttgac |
33700489 |
T |
|
| Q |
311 |
tgcagtgtaagcttcttttctagactgtacaacttcaaggtatcattctccattcttactaaataaccttt |
381 |
Q |
| |
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|| ||| |||||||||||||| || |||||| |||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
33700488 |
tgaagtataagcttcttttctggattgtacagcttcaaggtatcattctccattgttactgaataaccttt |
33700418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 14638742 - 14638380
Alignment:
| Q |
14 |
atatcggaatgcactacgttcagtacatgcttttctttcatcttcaattcagacttgaaagctaacctagaacgcttccctactaagcatatgctacata |
113 |
Q |
| |
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||||| ||||||||||| |||| |||||||||| || ||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
14638742 |
atatctgaatgcactacattcaatacatgctttgctctcatctttaattcagacttgaaagctgacctagaatgcttccctactaaacatatgctacatg |
14638643 |
T |
|
| Q |
114 |
atttttcagagatcttcacatttagctccccattcaccatattcttagatttcagtagacataagcttatatatttcaagtgtccataccttttgtgcca |
213 |
Q |
| |
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|||||||| |||||||||||||| ||||||| |||||||||| |||| |||||||| |||||||||| || | ||||||||| ||||||||||| |||| |
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| T |
14638642 |
atttttcaacgatcttcacatttaactccccaatcaccatattattagttttcagtaaacataagcttctaaagttcaagtgttcataccttttgagcca |
14638543 |
T |
|
| Q |
214 |
aagttcagattcatcatctttcactgaagctttataacacatttcctccttagtcactatgctggttttgaaagttctattctttttaagatttgattgc |
313 |
Q |
| |
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||||||||||||||||||||| | ||||| |||||| ||||||||||||||| ||| |||| |||||||||||||||||||| || ||| |||| | || |
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| T |
14638542 |
aagttcagattcatcatctttgattgaagatttatatcacatttcctccttaatcattatgttggttttgaaagttctattccttgtaaaatttcactgt |
14638443 |
T |
|
| Q |
314 |
agtgtaagcttcttttctagactgtacaacttcaaggtatcattctccattcttactaaataa |
376 |
Q |
| |
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||| ||||||||||||| || |||||| ||||||||||||||||||||| ||||| ||||| |
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|
| T |
14638442 |
agtataagcttcttttcaggattgtacagattcaaggtatcattctccattgttactgaataa |
14638380 |
T |
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