View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18438_low_8 (Length: 362)
Name: NF18438_low_8
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 352
Target Start/End: Original strand, 37472143 - 37472470
Alignment:
| Q |
22 |
caaaacatactcctcagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaa |
121 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37472143 |
caaaacatactcctaagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaa |
37472242 |
T |
|
| Q |
122 |
tttctcaatgaaaatgctgctgatgatcacccaaatatggctcctctcttcccctagatatcaaagatgccattcataaatatggttttggcctcagcaa |
221 |
Q |
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||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37472243 |
tttctcaatgagaatgctgctgatgatcacccaa--atggcccctctcttcccctagatatcaaagatgccattcataaatatggttttggcctcagcaa |
37472340 |
T |
|
| Q |
222 |
gtac-tgtgcgacatctgggctcaacccgacaccatttatctgcacaacaatggaaaccctttaatagtgtaagactaatcacttccatcgtttctattc |
320 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37472341 |
gtacacgtgcgacatctcggctcaacccggcaccatttatctgcacaaaaatggaaaccctttaata--gtaagactaatcacttccatcgtttctattc |
37472438 |
T |
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| Q |
321 |
ttgatttctttttcatatcggtttgctttcat |
352 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37472439 |
ttgatttctttttcatatcggtttgctttcat |
37472470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 33003872 - 33003759
Alignment:
| Q |
23 |
aaaacatactcctcagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaat |
122 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |
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| T |
33003872 |
aaaacatactcttcagaggaacataaacgctataggttcaaactgttcaaggagaactatcccattaagcctcctcacaataactacctttctctacaaa |
33003773 |
T |
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| Q |
123 |
ttctcaatgaaaat |
136 |
Q |
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| T |
33003772 |
tgctcaatgaaaat |
33003759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 40733746 - 40733608
Alignment:
| Q |
34 |
ctcagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaatttctcaatgaa |
133 |
Q |
| |
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|||||||||| | ||||||||||| |||||| | ||||||||||||||||| ||||| | || |||||| |||||||| |||| || ||||||||| |
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| T |
40733746 |
ctcagaggaagagaaacgctacagcttcaaagtattcaaggacaactatccagttaaggcgccagacaaaagttacctttgtctggctttcctcaatgaa |
40733647 |
T |
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| Q |
134 |
aatgctgctgatgatcacccaaatatggctcctctcttccc |
174 |
Q |
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||| |||| ||||||||| | |||||||||||| |||| |
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| T |
40733646 |
tatggtgctattgatcacccca--atggctcctctcatccc |
40733608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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