View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18438_low_9 (Length: 341)
Name: NF18438_low_9
Description: NF18438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18438_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 41989128 - 41988825
Alignment:
| Q |
19 |
ctaaggtccccacaggtactacatatataacaatacatatgcaactttggaattccacccacagctaattcgtgcggattcttataaattaatgacagat |
118 |
Q |
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| T |
41989128 |
ctaaggtccccacaggtactacatatataacaatacatatgcaactttggaattccacccacagctaattcgtgcggattcttataaat----gacatat |
41989033 |
T |
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| Q |
119 |
acacacctcttttttcaaccannnnnnncacttgtttatcaagaaaaatatgacattcttaaacataatgttaatattttagagaggtagaatatcaata |
218 |
Q |
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| T |
41989032 |
acacacctcttttttcaaccatttttttcacttgtttatcaagaaaaatatgacattcttaaacataatgttaatattttagagaggtagaatatcaata |
41988933 |
T |
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| Q |
219 |
catttaacgtggtgcaaaatttaaacaggaaaaattagtattatcaaaactttctatatggtactaaaacagataagatcataagaatcgaagtgaccat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41988932 |
catttaacgtggtgcaaaatttaaacaggaaaaattagtattatcaaaactttctatatggtactaaaacagataagatcataagaatcgaagtgaccat |
41988833 |
T |
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| Q |
319 |
tgacaaca |
326 |
Q |
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|||||||| |
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| T |
41988832 |
tgacaaca |
41988825 |
T |
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