View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18439_high_3 (Length: 526)
Name: NF18439_high_3
Description: NF18439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18439_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 9941555 - 9942061
Alignment:
| Q |
1 |
agtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcactttctc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9941555 |
agtatagattttgcaacgcaattccaaaccttaaagcttgaaacataacatctattgcaggcaccaccgctttagcaaattttttctttatcactttctc |
9941654 |
T |
|
| Q |
101 |
cattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaatcccaaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9941655 |
cattgcatcctaaaatcaccaaaa-ccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaatcccaaagaa |
9941753 |
T |
|
| Q |
201 |
ccttaagaaaaagataattcaccatatcaacaatattatgaaccaaaacaaggaaaatagaaaacactaaaacatggctaaatgaaagcataagatatat |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9941754 |
ccttaagaaaaagagaattcaccatatcaaaaatattatgaaccaaaacaaggaaaatagaaaacactaaaacagggctaaatgaaagcataagatatat |
9941853 |
T |
|
| Q |
301 |
agttgtgacgaaaagaattgccatatcagtcggggcaatggaaaacaggactaattgaattcagaaatttcatagcctcataaatatgcaacagaaagtg |
400 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
9941854 |
agttttgacgaaaagaattgccttatcagtcggggcaatggaaaacaggactaattgaattcagaagtttcatagactcataaatatgcaacagaaagtg |
9941953 |
T |
|
| Q |
401 |
agctgtatttctgcgtgttccaatataatcagggctctacaatagactttcatcaaaaagaaatttcacatgccataccattactctggacaatcaaaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9941954 |
agctgtatttctgcgtgttccaatataatcagggctctacaatagactttcatcaaaaagaaatttcacatgccataccattactctggacaatcaaaca |
9942053 |
T |
|
| Q |
501 |
tcaacaat |
508 |
Q |
| |
|
|||||||| |
|
|
| T |
9942054 |
tcaacaat |
9942061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 8208015 - 8208217
Alignment:
| Q |
3 |
tatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcactttctcca |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| |||||||| ||||||||| |
|
|
| T |
8208015 |
tatagattttgcaacgagattccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttattctttattgctttctcca |
8208114 |
T |
|
| Q |
103 |
ttgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaa-tcccaaagaac |
201 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8208115 |
ttgcatcctaaaattaccaaaag-cttaataatgaaa-ggatgaaaagcatgactagtagatgcgaagttattgatgtgtaaactaaacccccaaagaat |
8208212 |
T |
|
| Q |
202 |
cttaa |
206 |
Q |
| |
|
||||| |
|
|
| T |
8208213 |
cttaa |
8208217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 9335260 - 9335302
Alignment:
| Q |
146 |
aaaaacatgactagtagatgcgaagttattgatgtgtaaacta |
188 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
9335260 |
aaaaacatgactagtagatgtaaaggtattgatgtgtaaacta |
9335302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 42363153 - 42363339
Alignment:
| Q |
3 |
tatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcactttctcca |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
42363153 |
tatagattttgcaacgagattccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttgttctttatcgctttctcca |
42363252 |
T |
|
| Q |
103 |
ttgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaa |
190 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||| || | |||| ||||||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
42363253 |
ttgcatcctaaaattaccaagagccttaataatgaaa-ggacgaaaagcatgactagtagatgtgaagttattggtatgtaaactaaa |
42363339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 42363818 - 42363867
Alignment:
| Q |
310 |
gaaaagaattgccatatcagtcggggcaatggaaaacaggactaattgaattca |
363 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
42363818 |
gaaaagaattgccatatc----ggggtaatgggaaacaggactaattgaattca |
42363867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University