View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18439_low_1 (Length: 755)
Name: NF18439_low_1
Description: NF18439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18439_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 652; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 746
Target Start/End: Original strand, 26100326 - 26101063
Alignment:
| Q |
18 |
aatttatgtcggactaatatgattttcccaataaaagagtaggcgttgaaaatagagtgttaatgtgggtgctcctagcactaaacatgtgaaaaataaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26100326 |
aatttatgtcggactaatatgattttcccaataaaagagtaggcgttgaaaatagagtgttaaagtgggtgctcctagcactaaacatgtgaaaaataaa |
26100425 |
T |
|
| Q |
118 |
aagtattggtgaagccaagcaaattaacaaagtatataacaaaactaaattattgatacacaaatgtgcctaattgcaataaatgtcctgggaaatatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
26100426 |
aagtattggtgaagccaagcaaattaacaaagtatataacaaaactaaattattgatacacaaatgtgcctaattgcaacaaatgtcctgggaaataggt |
26100525 |
T |
|
| Q |
218 |
tacaagaatcaacattatttcatttcttttagtactaacattaagacaataataatagttaaatcacctacttcatcactgccatactatttactataaa |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26100526 |
tacaagaataaacattatttcatttcttttagtactaacattaagacaataataatagttaaatcacctacttcatcactgccatattatttactataaa |
26100625 |
T |
|
| Q |
318 |
gtatgagtattaatttctaagtataagagttaagggaagtaaacatttttgaaggaaaagaaggaaaagcctgatgagtggggacggaaaggtggtgtgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26100626 |
gtatgagtattaatttctaagtataagagttaagggaagtaaacatttttgaaggaaaagaaggaaaagcctgatgagtggggaaggaaaggtggtgtgt |
26100725 |
T |
|
| Q |
418 |
gtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaacgtggttacactgtccgagccactgtccgtgacccaagtatgtgca |
517 |
Q |
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| T |
26100726 |
gtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccgagccactgtccgtgacccaagtatgtgca |
26100825 |
T |
|
| Q |
518 |
tgtttttccttcaacttctttctccttatataaattcatcaacactcttatcctttatgtttcagcta-tttggtttcccttatgaa----tgattggtg |
612 |
Q |
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| T |
26100826 |
tgtttttccttcaacttctttctccttatataaattcatcaacactcttatcctttatgtttcagctattttggtttcccttatgaatgattgattggtg |
26100925 |
T |
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| Q |
613 |
t----gcaagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaag |
708 |
Q |
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| T |
26100926 |
tgcaagcaagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaag |
26101025 |
T |
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| Q |
709 |
gttccttcgactctgctgtcgagggttgtgatgatgtc |
746 |
Q |
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| T |
26101026 |
gttcctttgactctgttgttgagggttgtgatggtgtc |
26101063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 389 - 746
Target Start/End: Original strand, 25933190 - 25933544
Alignment:
| Q |
389 |
tgatgagtggggacggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaacgtggttacactgtccg |
488 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||| || || || || ||| |||||||||||||| | |
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| T |
25933190 |
tgatgagtggggaaggaaaagtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctccttcaatgtggttacactgtcag |
25933289 |
T |
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| Q |
489 |
agccactgtccgtgacccaagtatgtgcatgtttttccttcaacttctttctccttatataaattcatcaacac-----tcttatcctttatgtttcagc |
583 |
Q |
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| T |
25933290 |
agcaactgttcgtcacccaagtcagtgcttctttctccttata------------tatataaattcatcaccacaactctcttatcctttatgtttcagc |
25933377 |
T |
|
| Q |
584 |
tatttggtttcccttatgaatgattggtgtgcaa----gcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgca |
679 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
25933378 |
tatttggtttcccttatgaatgattggtgtgcaagcaagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgca |
25933477 |
T |
|
| Q |
680 |
actctttaaggcagatctcttggaagaaggttccttcgactctgctgtcgagggttgtgatgatgtc |
746 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| |||| |
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| T |
25933478 |
actctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagggttgtgatggtgtc |
25933544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 29548945 - 29549040
Alignment:
| Q |
620 |
aggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcctt |
715 |
Q |
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||||||| | || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||| |
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| T |
29548945 |
aggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctt |
29549040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 620 - 712
Target Start/End: Original strand, 29555154 - 29555246
Alignment:
| Q |
620 |
aggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttc |
712 |
Q |
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|||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |
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| T |
29555154 |
aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttc |
29555246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 403 - 510
Target Start/End: Original strand, 29554907 - 29555014
Alignment:
| Q |
403 |
ggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaacgtggttacactgtccgagccactgtccgtg |
502 |
Q |
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| T |
29554907 |
ggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttcgtg |
29555006 |
T |
|
| Q |
503 |
acccaagt |
510 |
Q |
| |
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| T |
29555007 |
atccaagt |
29555014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 29548730 - 29548843
Alignment:
| Q |
393 |
gagtggggacggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaaattcctactccaacgtggttacactgtccgagcc |
492 |
Q |
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| T |
29548730 |
gagtggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgttagagcc |
29548829 |
T |
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| Q |
493 |
actgtccgtgaccc |
506 |
Q |
| |
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| T |
29548830 |
actgttcgtgaccc |
29548843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 633 - 715
Target Start/End: Original strand, 87805 - 87887
Alignment:
| Q |
633 |
aaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcctt |
715 |
Q |
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||||||||||||||| |||| ||||||||||| |||||||| |||||||| || |||||| |||| | ||||||||| |||| |
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| T |
87805 |
aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctt |
87887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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