View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18439_low_5 (Length: 502)
Name: NF18439_low_5
Description: NF18439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18439_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 266 - 489
Target Start/End: Complemental strand, 18577069 - 18576848
Alignment:
| Q |
266 |
catcagaattataatgcattatttaatacaaatataatatcatagtttgtttgagctgatagcttttaagtagcatgaaagtaaattaataccgagcttc |
365 |
Q |
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| T |
18577069 |
catcagaattataatgcattgtttaatacaaatataatatcatagtttgtttgagctgatagcttt-aagtagcatgaaagtaaatttatacagagcttc |
18576971 |
T |
|
| Q |
366 |
atatgagataatttgaattttaatgataaaaggacttcttattatcatcattaagtcactggaaatccatcctaaatcaactcatttcagaatacttata |
465 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18576970 |
atatgagataatttgaattttaat-ataaaaggacttcttattatcatcataaagtcactggaaatccatcctaaatcaactcatttcagaatacttatc |
18576872 |
T |
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| Q |
466 |
agtatcactaagatggttaggagt |
489 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
18576871 |
agtatcactaagatggttaggagt |
18576848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 18577187 - 18577102
Alignment:
| Q |
149 |
caagaacaaagtacacaatttaatattttcccactcttggaagtaaggaaactctttctttacaaaaagatcttttagcgcattaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18577187 |
caagaacaaagtacacaatttaatattttcccactcttggaagtaaggaaactctttctttacaaaaagatcttttagcgcattaa |
18577102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 287 - 489
Target Start/End: Complemental strand, 14443441 - 14443240
Alignment:
| Q |
287 |
tttaatacaaatataatatcatagtttgtttgagctgatagcttttaagtagcatgaaagtaaattaataccgagcttcatatgagataatttgaatttt |
386 |
Q |
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| T |
14443441 |
tttaatacaaatataatatcatagtttgtttgagctgatagcttt-aagtagcatgaaagtaaatttatacagagcttcatatgagataatgtgaatttt |
14443343 |
T |
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| Q |
387 |
aatgataaaaggacttcttattatcatcattaagtcactggaaatccatcctaaatcaactcatttcagaatacttataagtatcactaagatggttagg |
486 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14443342 |
aatgataaaaggacttcttatcatcatcatcaagtcactggaaatccatcctaaatcaactcatttcagaatacttatcagtatcactaagatggttagg |
14443243 |
T |
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| Q |
487 |
agt |
489 |
Q |
| |
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||| |
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| T |
14443242 |
agt |
14443240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 38321955 - 38321751
Alignment:
| Q |
29 |
ttaatattctcaaagtaatatcttgatataacaacaaaaacaatagatatcctttctttatttcccagcagtgaagattagtagaactgccatcattaga |
128 |
Q |
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||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |
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| T |
38321955 |
ttaatattctcaaagtataat-ttgatataacaacaaaaactacagatatcctttctttatttcccagtagtgaaaattattagaactgccatcattaga |
38321857 |
T |
|
| Q |
129 |
ataagcgataaaacaagatgcaagaacaaagtacacaatttaatattttcccactcttggaagtaaggaaactctttctttacaaaaagatcttttagcg |
228 |
Q |
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||||| ||||||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38321856 |
ataagtgataaaacaagatacaagaacaaattacacaatttaatattctcccacccttggaagtaaggaaactttttctttacaaaaagatcttttagcg |
38321757 |
T |
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| Q |
229 |
cattaa |
234 |
Q |
| |
|
|||||| |
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|
| T |
38321756 |
cattaa |
38321751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 269 - 489
Target Start/End: Complemental strand, 38321724 - 38321502
Alignment:
| Q |
269 |
cagaattataatgcattatttaatacaaatataatatcatagtttgtttg--agctgatagcttttaagtagcatgaaagtaaattaataccgagcttca |
366 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||| ||||||||||| |||||||| |
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| T |
38321724 |
cagaattatagcgcattatttaatacaaatataatatcatagtttgtttttcagttgatagctat-aagtagcatgaaaataaattaatacagagcttca |
38321626 |
T |
|
| Q |
367 |
tatgagataatttgaattttaatgataaaaggacttcttattatcatcattaagtcactggaaatccatcctaaatcaactcatttcagaatacttataa |
466 |
Q |
| |
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| ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | |
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| T |
38321625 |
tctgagataatatgaattttaatgaaaaaaggacttcttattatcatcatcaagtcacaggaaacccatcctaaatcaactcatttcagaatacttatca |
38321526 |
T |
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| Q |
467 |
gtatcac-taagatggttaggagt |
489 |
Q |
| |
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||||||| |||||||||||||||| |
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| T |
38321525 |
gtatcacttaagatggttaggagt |
38321502 |
T |
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