View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18439_low_9 (Length: 228)
Name: NF18439_low_9
Description: NF18439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18439_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 35285148 - 35285339
Alignment:
| Q |
20 |
cttatttaggtacaacaacgctttgcgagcctctttggtgtttcggttcctacctctccaaaaccttgtggccggtcacttaccaattactgttccccaa |
119 |
Q |
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| T |
35285148 |
cttatttaggtacaacaacgctttgcgagcctctttggtgtttcggttcctacctctccaaaaccttgtggccggtcacttaccaattactgttccccaa |
35285247 |
T |
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| Q |
120 |
tagccacgttacacattagtatcatatcaatttttgtttaagatatcacatacgaaagttagagactaattattcgagatacatagattcat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
35285248 |
tagccacgttacacattagtatcatatcaatttttgtttaagatatcacaaacgaaagttagagactaattattcgagatagagagattcat |
35285339 |
T |
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