View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1843_high_1 (Length: 517)
Name: NF1843_high_1
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 49350305 - 49350805
Alignment:
| Q |
1 |
cttcctccaaggttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350305 |
cttcctccaatgttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctc |
49350404 |
T |
|
| Q |
101 |
agcttctccatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaaattctcagagtcccccattt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350405 |
agcttctgcatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaaattctcagagtcccccattt |
49350504 |
T |
|
| Q |
201 |
tcattaatgcaa-tccattaatgtttaattttatattagagtaatttacttgacttcattctctgtataaaaatataaccctaaacagttcatgaatctg |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49350505 |
tcattaatgcaactccattaatgtttaattttatattagagtaatttacttgacttcattctctgtataaaaatataaccctaaacagttcatgaatttg |
49350604 |
T |
|
| Q |
300 |
ctttggtaactaatcttcagtgctaaaaaattttagtgttgttacaaaaatattcacttcattccctttatggaaaatgtccacttttgatgctgatggt |
399 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350605 |
ctctggtaactaatcttcagtgctaaatttttttagtgttgttacaaaaatattcacttcattccctttatggaaaatgtccacttttgatgctgatggt |
49350704 |
T |
|
| Q |
400 |
gctttttaatgcccttgctgatctttgctcaaagattttctcctttacattatgtgtaccacatgtgtttttaagttaaaagtcaattttcgccaccgca |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350705 |
gcttttaaatgcccttgctgatctttgctcaaagattttctcctttacattatgtgtaccacatgtgtttttaagttaaaagtcaattttcgccaccgca |
49350804 |
T |
|
| Q |
500 |
t |
500 |
Q |
| |
|
| |
|
|
| T |
49350805 |
t |
49350805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 36663734 - 36663822
Alignment:
| Q |
21 |
cacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctcagcttctccatccttt |
116 |
Q |
| |
|
||||||||| ||||||||||||||| || |||| ||| ||| ||||||||| |||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
36663734 |
cacaagtatttgattgaactaaagaagactgaagttgtgatataatctttg-------acatgggttctttaagtgcctcagcttctgcttccttt |
36663822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University