View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1843_high_2 (Length: 369)
Name: NF1843_high_2
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 53493349 - 53493703
Alignment:
| Q |
1 |
atataaaatattttctaggggagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcac |
100 |
Q |
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| T |
53493349 |
atataaaatattttctaggggagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcac |
53493448 |
T |
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| Q |
101 |
tcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctcttaatattgcagagtttgaattag |
200 |
Q |
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| T |
53493449 |
tcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctcttaatattgcagagtttgaattag |
53493548 |
T |
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| Q |
201 |
aagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactctccattcaaaaattaagtgtagtgattgttctatcttttcatctcacc |
300 |
Q |
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| T |
53493549 |
aagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactgtccattcacaaattaagtgtagtgattgttctatcttttcatctcacc |
53493648 |
T |
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| Q |
301 |
cacttaaactacctggatatgtgattatgattgatggatataatttatgtacatc |
355 |
Q |
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| T |
53493649 |
cacttaaactacctggatatgtgattatgattgatggatataatttatgtacatc |
53493703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 16072530 - 16072748
Alignment:
| Q |
21 |
gagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaa |
120 |
Q |
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| T |
16072530 |
gagaacaataaataatgtattgcttagtttcctgaagctatagtacatgagacactaaataaaatcatataaatgatcactcttttctcaattttattga |
16072629 |
T |
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| Q |
121 |
gaataataataaaagtgtatt--aagtctgactatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataat |
218 |
Q |
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| T |
16072630 |
g---aatagtagaggtgtatttgttgtctgactatctatacttggatttctaactctctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaat |
16072726 |
T |
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| Q |
219 |
tcttgctgttggaatgacaaat |
240 |
Q |
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| T |
16072727 |
tcttgtggttggaaagacaaat |
16072748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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