View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1843_high_3 (Length: 319)
Name: NF1843_high_3
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 30293302 - 30293463
Alignment:
| Q |
149 |
tgccagattaaagagagccgctgaagcagaaaaggaagacaaaaaatagtgaccttagaagtttcattttaatcctaattttgttgttttgcaatacatt |
248 |
Q |
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| T |
30293302 |
tgccagattaaagagagccgctgaagcagaaaaggaagacaaaaaatagtgaccttagaagtttctttttaatcctaattttgttgttttgcaatacatt |
30293401 |
T |
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| Q |
249 |
tttgtttgagatcttaaccctatatttatattgagcatgtttagtaacatcttgagaattat |
310 |
Q |
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| T |
30293402 |
tttgtttgagatcttaaccctatatttatattgagcatgtttagtaacatcttgagaattat |
30293463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 30293197 - 30293304
Alignment:
| Q |
21 |
cagggtacatacttgcccattgtgagggagaagccatctgtcgaacttgttaaggttaccgatgaaatgaaggcattcaaagcttactataagcttcgtc |
120 |
Q |
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| T |
30293197 |
cagggtacatacttgcccattgtgagggagaagccatctgtcgaacttgttaaggttaccgatgaaatgaaggcattcaaagcttactataagcttcgtc |
30293296 |
T |
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| Q |
121 |
ttgaatgc |
128 |
Q |
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| T |
30293297 |
ttgaatgc |
30293304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 6902659 - 6902821
Alignment:
| Q |
28 |
catacttgcccattgtgagggagaagccatctgtcgaacttgttaaggttaccgatgaaatgaaggcattcaaagcttactataagcttcgtcttgaatg |
127 |
Q |
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| T |
6902659 |
catacttgccaattgtgagggagaagccaactgttgaacttgttaaggttacagatgaaatgaaggcattcaaagcttattacaagcttcgccttgaacg |
6902758 |
T |
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| Q |
128 |
cactaatcaacgccatcttggtgccagattaaagagagccgctgaagcagaaaaggaagacaa |
190 |
Q |
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| T |
6902759 |
caccaataagcgtcatttgggagctaggctcaagagggctgctgaggcagaaaaggaagacaa |
6902821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 6915387 - 6915431
Alignment:
| Q |
86 |
aatgaaggcattcaaagcttactataagcttcgtcttgaatgcac |
130 |
Q |
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| T |
6915387 |
aatgaaggcattcaaagcttattacaagcttcgccttggatgcac |
6915431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 45810824 - 45810986
Alignment:
| Q |
28 |
catacttgcccattgtgagggagaagccatctgtcgaacttgttaaggttaccgatgaaatgaaggcattcaaagcttactataagcttcgtcttgaatg |
127 |
Q |
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| T |
45810824 |
catacttaccaattgtgagggagaagccatctgtggagcttgttaagattacagatgaaatgaaggcatttaaggcttattacaagcttcgtcttgagcg |
45810923 |
T |
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| Q |
128 |
cactaatcaacgccatcttggtgccagattaaagagagccgctgaagcagaaaaggaagacaa |
190 |
Q |
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| T |
45810924 |
aacaaacaaacgccatttgggtgccagactgaagagggctgctgaggcagagaaggaagacaa |
45810986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 11044213 - 11044062
Alignment:
| Q |
39 |
attgtgagggagaagccatctgtcgaacttgttaaggttaccgatgaaatgaaggcattcaaagcttactataagcttcgtcttgaatgcactaatcaac |
138 |
Q |
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|||||||| |||||||||||||| || ||||||||| |||| ||||||||||||||||| || ||||| || |||||||||||||| | || || ||| |
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| T |
11044213 |
attgtgagcgagaagccatctgtagagcttgttaagattacagatgaaatgaaggcatttaaggcttattacaagcttcgtcttgagcgaacaaacaaac |
11044114 |
T |
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| Q |
139 |
gccatcttggtgccagattaaagagagccgctgaagcagaaaaggaagacaa |
190 |
Q |
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| T |
11044113 |
gccatttgggtgccagactgaagagggctgccgaggcagagaaggaagacaa |
11044062 |
T |
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