View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1843_high_7 (Length: 236)
Name: NF1843_high_7
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 38976685 - 38976822
Alignment:
| Q |
84 |
attaagtcatttcgttaaattaccattagactaccgttactcaacacctacatgacatattacattatgaaaaatgttgtgtggtgcgaataatctatcg |
183 |
Q |
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| T |
38976685 |
attaagtcatttcgttaaattaccattagactaccgttactcaacacctacatgacatattacattatgaaaaatgttgtgtggtgcgaatcatctatcg |
38976784 |
T |
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| Q |
184 |
tgcaaaacccacgaattaccttttctaacttttacaat |
221 |
Q |
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| T |
38976785 |
tgcaaaacccacgaattatcttttttaacttttacaat |
38976822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 32204049 - 32204101
Alignment:
| Q |
154 |
aaaatgttgtgtggtgcgaataatctatcgtgcaaaacccacgaattaccttt |
206 |
Q |
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| T |
32204049 |
aaaatgctgtgtggtgcgaatcatctatcgtgcaaaacccacgaattaccttt |
32204101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 38976620 - 38976663
Alignment:
| Q |
18 |
tgataatttttaatcatatcactaaactaaaaattaggagtaat |
61 |
Q |
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| T |
38976620 |
tgataatttttaaacatatcactaaactaaaaattaggagtaat |
38976663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 49907368 - 49907299
Alignment:
| Q |
152 |
gaaaaatgttgtgtggtgcgaataatctatcgtgcaaaacccacgaattaccttttctaacttttacaat |
221 |
Q |
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| T |
49907368 |
gaaaaatgctctgtggtgcgaatcatctatcgtgcaaaacccacgaattaccttttttaacttttacaat |
49907299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 34637817 - 34637862
Alignment:
| Q |
150 |
atgaaaaatgttgtgtggtgcgaataatctatcgtgcaaaacccac |
195 |
Q |
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| T |
34637817 |
atgaaaaatgctgtgttttgcgaatcatctatcgtgcaaaacccac |
34637862 |
T |
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