View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1843_high_9 (Length: 215)
Name: NF1843_high_9
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 47812125 - 47811927
Alignment:
| Q |
1 |
ctccattgcagacttaacatgcttctactagaccaactagtaatgtatgtcaatgttttaattatatattagtaaaaggaggactannnnnnnctcttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47812125 |
ctccattgcagacttaacatgcttctactagaccaactagtaatgtatgtcaatgttttaattatatattagtaaaaggaggact---tttttctcttcc |
47812029 |
T |
|
| Q |
101 |
caaaataagtatatcacttcaagtacaacgatcactaccactgcatttaagatcacctatgaaacaggtaaattacttaaataccaaaatggtttaccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47812028 |
caaaataagtatatcacttcaagtacaacgatcactaccactgcatttaagatcacctatgaaacaggtaaattacttaaataccaaaatggtttaccct |
47811929 |
T |
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