View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1843_low_1 (Length: 651)

Name: NF1843_low_1
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1843_low_1
NF1843_low_1
[»] chr3 (5 HSPs)
chr3 (88-310)||(43032140-43032360)
chr3 (388-474)||(43031971-43032056)
chr3 (556-636)||(43031809-43031890)
chr3 (89-183)||(43047997-43048089)
chr3 (604-638)||(43048702-43048736)
[»] chr2 (1 HSPs)
chr2 (413-471)||(14798212-14798270)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 88 - 310
Target Start/End: Complemental strand, 43032360 - 43032140
Alignment:
Q  88 cggtccaaaatgaaacccattaagtccaatcacaagaatttagcctctgatcaacacaagttcttcgaatcgtaaaaaagataatgaatttacctcnnnn 187  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        
T  43032360 cggtcgaaaatgaaacccattaagtccaatcacaagaatttagcctctgatcaacacaagttcatcgaatcgtaaaaaagataatgaatttacctcaaaa 43032261  T
Q  188 nnnnnnnnnnnggtttcagccaaagtagaaagaatcgcgatccaactcgccggaatcgtaatccggtggaagtagccggaattgccccgaaaacgtgtgg 287  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  43032260 accaaaaaa--ggtttcagccaaagtagaaagaatcgcgatccaactcgccggaatcgtaattcggtggaagcagccggaattgcctcgaaaacgtgtgg 43032163  T
Q  288 taacggtggaatcgagcgttttt 310  Q
     ||||||||||||||||||||||    
T  43032162 gaacggtggaatcgagcgttttt 43032140  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 43032056 - 43031971
Alignment:
Q  388 ttgatattatgtatttgtgcaacgttttttgctgaataattatttcaattaattgccgaaaactttcccaatactcccattaattgt 474  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43032056 ttgatattatgtatttgtgtaacgttttt-gctgaataattatttcaattaattgccgaaaactttcccaatactcccattaattgt 43031971  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 43031890 - 43031809
Alignment:
Q  556 tagctagcacactca-tgttgtaatgtatatgtggtgttgtttaatctcggttttgtttgcaggatatctgagttttgagat 636  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  43031890 tagctagcacactcactgttgtaatgtatctgtggtgttatttaatcttggttttgtttgcaggatatctgagttttgagat 43031809  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 43048089 - 43047997
Alignment:
Q  89 ggtccaaaatgaaacccattaagtccaatcacaagaatttagcctctgatcaacacaagttcttcgaatcgtaaaaaagataatgaatttacctc 183  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||| | ||||| ||||||||| | ||||||||||||    
T  43048089 ggtcaaaaatgaaactcattaagtccaatcacaagaattttgcctctga--aacacaagttcatagaatcataaaaaagagagtgaatttacctc 43047997  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 604 - 638
Target Start/End: Original strand, 43048702 - 43048736
Alignment:
Q  604 ggttttgtttgcaggatatctgagttttgagattg 638  Q
    |||||||||||||||||||||||||||||||||||    
T  43048702 ggttttgtttgcaggatatctgagttttgagattg 43048736  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 14798212 - 14798270
Alignment:
Q  413 tttttgctgaataattatttcaattaattgccgaaaactttcccaatactcccattaat 471  Q
    |||||||| |||||||||| |||||||||||| |||||||| ||||||| |||||||||    
T  14798212 tttttgctcaataattattccaattaattgcctaaaacttttccaatacacccattaat 14798270  T

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