View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1843_low_12 (Length: 233)
Name: NF1843_low_12
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 39255648 - 39255446
Alignment:
| Q |
10 |
tagattatactataagcaaaatgcacttgattatttttgtctcccattaaagttgagttatatgagacagccacaacatcggtccttccattccaatccc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39255648 |
tagattatactataagcaaaatgcacttgattatttttgtctcccacta--gttgagttatatgagacagccacaacatcggtccttccattccaatccc |
39255551 |
T |
|
| Q |
110 |
tctcagatcactgttcattcaccccttccaatctcattctccacctctgtt-ttttcctccacaatagcaataatattcactgcacatttatcagtcatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39255550 |
tctcagatcactgttcattcaccccttccaatctcattctccacctctgtttttttcctccacaatatcaataatattcactgcacatttatcagtcatg |
39255451 |
T |
|
| Q |
209 |
taaat |
213 |
Q |
| |
|
||||| |
|
|
| T |
39255450 |
taaat |
39255446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 30962530 - 30962441
Alignment:
| Q |
10 |
tagattatactataagcaaaatgcacttgattatttttgtctcccattaaagttgagttatatgagacagccacaacatcggtccttccatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30962530 |
tagattatactataagcaaaatgcacttgattatttttgtctcccact--agttgagttatacgagacagccacaacatcggtccttccatt |
30962441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 52743754 - 52743955
Alignment:
| Q |
10 |
tagattatactataagcaaaatgcacttgattatttttgtctcccattaaagttgagttatatgagacagccacaacatcggtccttccattccaatccc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52743754 |
tagattatactataagcaaaatgcacttgattatttttgtctcccacta--gttgagttatatgagacagccacaacatcggtccttccattccaatccc |
52743851 |
T |
|
| Q |
110 |
tctcagatcactgttcattcaccccttccaatctcattctccacctctg-ttttttcctccacaatagcaataatattcactgcacatttatcagtcatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
52743852 |
tctcagatcactgttcattcaccccttccaatctcattcttcacctctgtttttttcctccacaatatcaataatattcactgcacatttatcagtcatg |
52743951 |
T |
|
| Q |
209 |
taaa |
212 |
Q |
| |
|
|||| |
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|
| T |
52743952 |
taaa |
52743955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 21218717 - 21218918
Alignment:
| Q |
10 |
tagattatactataagcaaaatgcacttgattatttttgtctcccattaaagttgagttatatgagacagccacaacatcggtccttccattccaatccc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
21218717 |
tagattatactataagcaaaatgcacttgattatttttgtctcccacta--gttgagttatatgagacagccacaacatcggtcctttcattccaatcca |
21218814 |
T |
|
| Q |
110 |
tctcagatcactgttcattcaccccttccaatctcattctccacctctg-ttttttcctccacaatagcaataatattcactgcacatttatcagtcatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
21218815 |
tctcagatcactgttcattcaccccttccaatctcattctccacctctgtttttttcctccacaatatcaataatattcactacacatttatcagtcatg |
21218914 |
T |
|
| Q |
209 |
taaa |
212 |
Q |
| |
|
|||| |
|
|
| T |
21218915 |
taaa |
21218918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 50124641 - 50124436
Alignment:
| Q |
10 |
tagattatactataagcaaaatgcacttgattattttt----gtctcccattaaagttgagttatatgagacagccacaacatcggtccttccattccaa |
105 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |||||||| || ||||||||||||||||| | |||||||||||| |||||||||||| |
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|
| T |
50124641 |
tagattatactataagcaaaatacactagattatttttatttgtctcccagta--gttgagttatatgagactgacacaacatcggtacttccattccaa |
50124544 |
T |
|
| Q |
106 |
tccctctcagatcactgttcattcaccccttccaatctcattctccacctctg-ttttttcctccacaatagcaataatattcactgcacatttatcagt |
204 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
50124543 |
tccctctcagattattgttcattcaccccttccaatctcattctccaactttgtttttttcctccacaatatcaataatattcactgcagatttatcagt |
50124444 |
T |
|
| Q |
205 |
catgtaaa |
212 |
Q |
| |
|
|||||||| |
|
|
| T |
50124443 |
catgtaaa |
50124436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 8125747 - 8125642
Alignment:
| Q |
109 |
ctctcagatcactgttcattcacccc-ttccaatctcattctccacctctgttttttcctcc-acaatagcaataatattcactgcacatttatcagtca |
206 |
Q |
| |
|
||||||||||| || ||| |||||| || ||||||||||||||| |||| | |||||| || |||||| ||| |||||| | |||| |||||||||||| |
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|
| T |
8125747 |
ctctcagatcattggtcactcaccctattgcaatctcattctccaactctttgttttccccccacaatatcaacaatatttagtgcagatttatcagtca |
8125648 |
T |
|
| Q |
207 |
tgtaaa |
212 |
Q |
| |
|
|||||| |
|
|
| T |
8125647 |
tgtaaa |
8125642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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