View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1843_low_2 (Length: 636)

Name: NF1843_low_2
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1843_low_2
NF1843_low_2
[»] chr3 (21 HSPs)
chr3 (10-528)||(1387049-1387568)
chr3 (419-528)||(50122319-50122428)
chr3 (416-528)||(3350040-3350152)
chr3 (416-528)||(11511300-11511412)
chr3 (448-528)||(20393696-20393776)
chr3 (416-501)||(41754321-41754405)
chr3 (416-473)||(41755109-41755166)
chr3 (416-527)||(3349425-3349537)
chr3 (477-528)||(1388124-1388175)
chr3 (416-497)||(55122166-55122247)
chr3 (416-496)||(33304141-33304221)
chr3 (443-527)||(44685825-44685908)
chr3 (476-522)||(44687484-44687530)
chr3 (477-526)||(5136581-5136630)
chr3 (443-528)||(54203462-54203547)
chr3 (416-497)||(55121529-55121610)
chr3 (416-472)||(11510173-11510229)
chr3 (477-528)||(33304987-33305038)
chr3 (311-358)||(46436085-46436132)
chr3 (419-500)||(36346307-36346388)
chr3 (477-521)||(13742744-13742788)
[»] chr4 (6 HSPs)
chr4 (268-415)||(17290099-17290250)
chr4 (416-506)||(53777101-53777191)
chr4 (416-463)||(53777198-53777245)
chr4 (416-472)||(31242833-31242889)
chr4 (424-497)||(40900677-40900750)
chr4 (416-472)||(26791583-26791639)
[»] chr8 (5 HSPs)
chr8 (271-395)||(26652162-26652290)
chr8 (554-622)||(41777731-41777799)
chr8 (477-528)||(7577111-7577162)
chr8 (478-528)||(37577757-37577807)
chr8 (483-528)||(27704557-27704602)
[»] chr2 (14 HSPs)
chr2 (271-415)||(17458773-17458921)
chr2 (416-528)||(43978145-43978257)
chr2 (416-527)||(43977527-43977639)
chr2 (416-526)||(33667870-33667980)
chr2 (484-527)||(17688786-17688829)
chr2 (416-497)||(13863041-13863121)
chr2 (416-472)||(958691-958747)
chr2 (419-499)||(16118981-16119061)
chr2 (458-501)||(432071-432114)
chr2 (477-528)||(28138312-28138363)
chr2 (484-526)||(39378343-39378385)
chr2 (443-496)||(16211825-16211878)
chr2 (484-528)||(17688288-17688332)
chr2 (416-472)||(42176015-42176071)
[»] chr7 (14 HSPs)
chr7 (274-412)||(9043787-9043929)
chr7 (416-523)||(19804629-19804736)
chr7 (416-528)||(4997854-4997966)
chr7 (416-527)||(31873335-31873446)
chr7 (415-500)||(35200195-35200280)
chr7 (416-497)||(46088917-46088998)
chr7 (416-497)||(46741434-46741515)
chr7 (416-528)||(35200787-35200900)
chr7 (449-527)||(31873849-31873927)
chr7 (416-474)||(46089726-46089784)
chr7 (416-501)||(4997289-4997374)
chr7 (309-358)||(35552628-35552677)
chr7 (416-472)||(45350841-45350897)
chr7 (477-521)||(40323665-40323709)
[»] scaffold0153 (2 HSPs)
scaffold0153 (416-528)||(17390-17502)
scaffold0153 (443-528)||(16854-16939)
[»] chr1 (12 HSPs)
chr1 (416-527)||(33205418-33205529)
chr1 (445-528)||(52427520-52427603)
chr1 (416-521)||(15660260-15660365)
chr1 (415-499)||(10974777-10974861)
chr1 (421-505)||(21263308-21263392)
chr1 (309-358)||(18917264-18917313)
chr1 (477-526)||(32161321-32161370)
chr1 (484-528)||(253304-253348)
chr1 (477-528)||(32160727-32160778)
chr1 (477-528)||(33206030-33206081)
chr1 (484-528)||(20114607-20114651)
chr1 (484-528)||(46320480-46320524)
[»] scaffold0206 (1 HSPs)
scaffold0206 (416-501)||(11534-11619)
[»] chr5 (10 HSPs)
chr5 (430-528)||(29413303-29413403)
chr5 (416-472)||(39742509-39742565)
chr5 (416-472)||(42098237-42098293)
chr5 (476-526)||(35777044-35777094)
chr5 (419-472)||(6268106-6268159)
chr5 (443-528)||(18848039-18848124)
chr5 (419-496)||(20421856-20421933)
chr5 (421-501)||(35776652-35776733)
chr5 (419-463)||(29429967-29430011)
chr5 (416-472)||(30966725-30966781)
[»] chr6 (4 HSPs)
chr6 (416-474)||(5722991-5723049)
chr6 (416-500)||(19757918-19758002)
chr6 (477-528)||(11687919-11687970)
chr6 (448-492)||(30763287-30763331)
[»] scaffold0221 (1 HSPs)
scaffold0221 (321-415)||(18007-18105)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 528
Target Start/End: Original strand, 1387049 - 1387568
Alignment:
Q  10 attatactgcaaagaaacgttagacaataaaatctttcttatgaaagtaaccaatcaaaaagtaattaataattacaacacacaattattatttgagtat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1387049 attatactgcaaagaaacgttagacaataaaatctttcttatgaaagtaaccaatcaaaaagtaattaataattacaacacacaattattatttgagtat 1387148  T
Q  110 ctttagattatgtatcaatgttgaaatcattttatttttg-aattgctactcttcaaaatcttggtttccattgattataacaattagagtatcttttaa 208  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1387149 ctttagattatgtatcaatgttgaaatcattttatttttggaattgctactcttcaaaatcttggtttccattgattataacaattagagtatcttttaa 1387248  T
Q  209 ccgtgtatcttcatcaaattctaaaaatttaagaaactgttttgcaactaaatataaaaatatgttataagaaattataaaaagataatgattataattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1387249 ccgtgtatcttcatcaaattctaaaaatttaagaaactgttttgcaactaaatataaaaatatgttataagaaattataaaaagataatgattataattt 1387348  T
Q  309 ttactatttaggttgaaatatctatccaaattatcaacttacaatagtaaataatatttattacttagataaatgccaaattagaatagtgaaacaaata 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1387349 ttactatttaggttgaaatatctatccaaattatcaacttacaatagtaaataatatttattacttagagaaatgccaaattagaatagtgaaacaaata 1387448  T
Q  409 atttcacgagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattg 508  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  1387449 atttcacgagaattgctgtttacacatgctataagactgaaaaatactaataaaagatgaaaatgcctctgcaacagttaactaccgaagtttggaattg 1387548  T
Q  509 gccgcagttaactaccgaag 528  Q
     |||||||||||||||||||    
T  1387549 accgcagttaactaccgaag 1387568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 528
Target Start/End: Original strand, 50122319 - 50122428
Alignment:
Q  419 aattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagtta 518  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||  | | ||||||||||||||||| ||  |||  ||| |||||||    
T  50122319 aattgctgtatacacatgttataaggctgaaaaacacaagtaaaagacgaaaatgccaccgtgacagttaactaccgaaattaagaaccggctgcagtta 50122418  T
Q  519 actaccgaag 528  Q
    ||| ||||||    
T  50122419 actgccgaag 50122428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 3350152 - 3350040
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||| |||||||||||||||   ||| |||||||||||||  |||||||||||||||||  ||||   ||||||||||||||||||| ||| ||| ||||    
T  3350152 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtagttaactaccgaagtttgaaatcggctgcag 3350053  T
Q  516 ttaactaccgaag 528  Q
    |||||||||||||    
T  3350052 ttaactaccgaag 3350040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 11511412 - 11511300
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    ||||||||  ||| ||||||| ||||||||||| |||||| |||||||||||||||||| ||  |||||||||||||||||| |   |||  ||| ||||    
T  11511412 gagaattgtcgttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgcag 11511313  T
Q  516 ttaactaccgaag 528  Q
    |||||||||||||    
T  11511312 ttaactaccgaag 11511300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 448 - 528
Target Start/End: Original strand, 20393696 - 20393776
Alignment:
Q  448 aaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||| |||  ||||||| |||||||||| ||||||    
T  20393696 aaaaacacatgtaaaagacgaaaatgcctctgcgacagttaactaccgaaatttaaaattggcagcagttaactgccgaag 20393776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 501
Target Start/End: Original strand, 41754321 - 41754405
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagttt 501  Q
    |||||||||| || ||||||| ||||||||||| |||||| ||||||||||||||||||| |  ||||||||||||| ||||||||    
T  41754321 gagaattgcttttgacacatgttataaggctgagaaacac-agtaaaagacgaaaatgctccatcgacagttaactatcgaagttt 41754405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 473
Target Start/End: Complemental strand, 41755166 - 41755109
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatg 473  Q
    ||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||    
T  41755166 gagaattgctgttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatg 41755109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 416 - 527
Target Start/End: Original strand, 3349425 - 3349537
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaag-tttggaattggccgca 514  Q
    |||||||| |||||||| ||   ||| || ||||||||||  ||||||||||||||||| |||||| ||| |||||||||||| |||| ||  ||| |||    
T  3349425 gagaattgttgtttacatatatgatagggttgaaaaacacatgtaaaagacgaaaatgcctctgcggcagctaactaccgaagttttgaaaccggctgca 3349524  T
Q  515 gttaactaccgaa 527  Q
    |||||||||||||    
T  3349525 gttaactaccgaa 3349537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 1388175 - 1388124
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  1388175 ctgcggcagttaactaccgaagtttggaatcggctgcagttaactaccgaag 1388124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 55122247 - 55122166
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaa 497  Q
    |||||||| ||||  ||||||  ||||| |||| |||||||||||||||||||||||||  |  ||||||||||||||||||    
T  55122247 gagaattgttgttggcacatgtcataagactgagaaacactagtaaaagacgaaaatgccccctcgacagttaactaccgaa 55122166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 33304141 - 33304221
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccga 496  Q
    |||| |||||||||||||||   ||| |||||||||||||  ||||||||| |||||||| ||||| ||||||||| ||||    
T  33304141 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacaaaaatgctcctgcggcagttaactgccga 33304221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 527
Target Start/End: Original strand, 44685825 - 44685908
Alignment:
Q  443 ggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaa 527  Q
    |||||||||||||   ||||||||||||||||| ||  |||||||| ||||||||||||| ||  ||| ||||||||||||||||    
T  44685825 ggctgaaaaacacatataaaagacgaaaatgctcctatgacagtta-ctaccgaagtttgaaaccggctgcagttaactaccgaa 44685908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 522
Target Start/End: Complemental strand, 44687530 - 44687484
Alignment:
Q  476 tctgcgacagttaactaccgaagtttggaattggccgcagttaacta 522  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  44687530 tctgcgacagttaactaccgaagtttagaactggctgcagttaacta 44687484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 5136581 - 5136630
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccga 526  Q
    ||||||||||||||||||||| |||||||  ||| |||||||||||||||    
T  5136581 ctgcgacagttaactaccgaaatttggaaccggctgcagttaactaccga 5136630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 54203462 - 54203547
Alignment:
Q  443 ggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||| ||  ||||||||||||||||   ||||| || ||||||||| ||||||||||  ||| |||||||||| ||||||    
T  54203462 ggctgaaaaatacgtgtaaaagacgaaaatgtccctgcggcaattaactaccaaagtttggaaccggctgcagttaactcccgaag 54203547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 55121529 - 55121610
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaa 497  Q
    |||||||| |||| ||||||| ||||||||||| ||||||||||||| ||  |||||||  |  || |||||||||||||||    
T  55121529 gagaattgttgttgacacatgttataaggctgataaacactagtaaaggataaaaatgccccctcggcagttaactaccgaa 55121610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 11510173 - 11510229
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    |||||||| |||| ||||||| ||||||||||||||||||  |||||| ||||||||    
T  11510173 gagaattgatgttgacacatgttataaggctgaaaaacaccggtaaaatacgaaaat 11510229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 33305038 - 33304987
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||| |||||||||||||||||||||||  ||| ||||||||| |||||||    
T  33305038 ctgcggcagttaactaccgaagtttggaaccggctgcagttaacaaccgaag 33304987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 46436132 - 46436085
Alignment:
Q  311 actatttaggttgaaatatctatccaaattatcaacttacaatagtaa 358  Q
    |||||||||||||||||||||||||| | | |||||||| ||||||||    
T  46436132 actatttaggttgaaatatctatccataatgtcaacttataatagtaa 46436085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 500
Target Start/End: Original strand, 36346307 - 36346388
Alignment:
Q  419 aattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtt 500  Q
    |||||||||| ||||||   ||| |||||||||||||   ||||||||||||| |   ||||| ||||||||||||||||||    
T  36346307 aattgctgttgacacatataatagggctgaaaaacacatataaaagacgaaaaagtccctgcggcagttaactaccgaagtt 36346388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 13742744 - 13742788
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaact 521  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||    
T  13742744 ctgcgacagttaactaccgaagtttgaaaccggctgcagttaact 13742788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 268 - 415
Target Start/End: Original strand, 17290099 - 17290250
Alignment:
Q  268 atatgttataagaaattataaaaagataatgattataatttttactatttaggttgaaatatctatccaaattatcaacttacaatagtaaataatatt- 366  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |     
T  17290099 atatgttataataaattatataaagataatgattatagtttttactatttaggttgaaatatctatccaaattgtcaacttacaatagtaaataataatt 17290198  T
Q  367 ---tattacttagataaatgccaaattagaatagtgaaacaaataatttcac 415  Q
       |||||| | | ||||||||||||||||||||| ||||||||||||||||    
T  17290199 acctattacctgggtaaatgccaaattagaatagtcaaacaaataatttcac 17290250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 506
Target Start/End: Original strand, 53777101 - 53777191
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaat 506  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  53777101 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgcccctgcggcagttaactaccgaagtttagaat 53777191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 53777245 - 53777198
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaa 463  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  53777245 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaa 53777198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 31242889 - 31242833
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    |||||||||||||||||||||  | |||||||| ||||||  |||||||||||||||    
T  31242889 gagaattgctgtttacacatgtgagaaggctgagaaacacatgtaaaagacgaaaat 31242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 497
Target Start/End: Complemental strand, 40900750 - 40900677
Alignment:
Q  424 ctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaa 497  Q
    ||||| ||||||| |||| |||||| |||||| |||||||||| |||||||  |  ||||||||||||| ||||    
T  40900750 ctgttgacacatgttatatggctgagaaacaccagtaaaagacaaaaatgccccctcgacagttaactatcgaa 40900677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 26791583 - 26791639
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    ||||||||||||||||||||   | |||||||| ||||||  |||||||||||||||    
T  26791583 gagaattgctgtttacacatatgagaaggctgagaaacacatgtaaaagacgaaaat 26791639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 271 - 395
Target Start/End: Original strand, 26652162 - 26652290
Alignment:
Q  271 tgttataagaaattataaaaagataatgattataatttttactatttaggttgaaatatctatccaaattatcaacttacaatagtaaat----aatatt 366  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |    | |||     
T  26652162 tgttataagaaattataaaaacataatgattatagtttttactatttaggttgaaatatctatccaaaatgtcaacttacaatagtaagtgtcaattatc 26652261  T
Q  367 tattacttagataaatgccaaattagaat 395  Q
    |||||| ||| ||||||||||||||||||    
T  26652262 tattacctaggtaaatgccaaattagaat 26652290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 554 - 622
Target Start/End: Complemental strand, 41777799 - 41777731
Alignment:
Q  554 catttttggatgttagatagagcatcaatgcattaataatgtgattgattttctgagacttaatagtga 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41777799 catttttggatgttagatagagcatcaatgcattaataatgtgattgattttctgagacttaatagtga 41777731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 7577111 - 7577162
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||||||||||||||||||||  ||| ||| |||||| ||||||    
T  7577111 ctgcgacagttaactaccgaagtttggaaccggctgcaattaactcccgaag 7577162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 37577807 - 37577757
Alignment:
Q  478 tgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||||||||||||||| |||  ||| ||| |||||||||||||    
T  37577807 tgcgacagttaactaccgaagttttgaaccggctgcaattaactaccgaag 37577757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 27704602 - 27704557
Alignment:
Q  483 cagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||||||||||| ||  ||| |||||||||||||||||    
T  27704602 cagttaactaccgaagtttgaaaccggctgcagttaactaccgaag 27704557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 271 - 415
Target Start/End: Complemental strand, 17458921 - 17458773
Alignment:
Q  271 tgttataagaaattataaaaagataatgattataatttttactatttaggttgaaatatctatccaaattatcaacttacaatagtaaat----aatatt 366  Q
    ||||||||||||||||||||| ||||| ||||||  | |||||||||||||||||||||||||| ||| | ||||||||||||||||| |    | |||     
T  17458921 tgttataagaaattataaaaacataataattataggtcttactatttaggttgaaatatctatctaaaatgtcaacttacaatagtaagtgttaattatc 17458822  T
Q  367 tattacttagataaatgccaaattagaatagtgaaacaaataatttcac 415  Q
    |||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  17458821 tattacctatgtaaatgccaaattagaatagtgaaacaaataatttcac 17458773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 43978257 - 43978145
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||| |||||||||||||||   ||| |||||||||||||  |||||||||||||||||  |||||  ||||||||||||||||||| ||| ||| ||||    
T  43978257 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagtttgaaatcggctgcag 43978158  T
Q  516 ttaactaccgaag 528  Q
    ||||||| |||||    
T  43978157 ttaactatcgaag 43978145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 416 - 527
Target Start/End: Original strand, 43977527 - 43977639
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaag-tttggaattggccgca 514  Q
    ||||||||||||||| ||||   |||  ||||||||||||  |||||||||||||||||  ||||| ||| |||||||||||| |||| ||  ||| |||    
T  43977527 gagaattgctgtttatacatatgatagagctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgca 43977626  T
Q  515 gttaactaccgaa 527  Q
    |||||||||||||    
T  43977627 gttaactaccgaa 43977639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 526
Target Start/End: Complemental strand, 33667980 - 33667870
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||||||| | || ||||||| ||||||||||| |||||| |||||||||||||||||| ||  |  ||||||||||||||| |   |||  ||| ||||    
T  33667980 gagaattgtttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgcag 33667881  T
Q  516 ttaactaccga 526  Q
    |||||||||||    
T  33667880 ttaactaccga 33667870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 17688829 - 17688786
Alignment:
Q  484 agttaactaccgaagtttggaattggccgcagttaactaccgaa 527  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  17688829 agttaactaccgaagtttggaactggcggcagttaactaccgaa 17688786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 13863121 - 13863041
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaa 497  Q
    |||||||||| || ||||||| ||||||| ||| |||||| | |||||||||||||||| ||  ||||||||||||| ||||    
T  13863121 gagaattgctattgacacatgttataaggttgagaaacaccaataaaagacgaaaatgc-tcatcgacagttaactatcgaa 13863041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 958747 - 958691
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    ||||||||||||| ||||||| ||||||||||| |||||| ||||||| || |||||    
T  958747 gagaattgctgttcacacatgttataaggctgagaaacaccagtaaaataccaaaat 958691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 499
Target Start/End: Original strand, 16118981 - 16119061
Alignment:
Q  419 aattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagt 499  Q
    |||||||||| ||||||   ||| |||||||||||||  ||||| |||||||||||  |||| || |||||||||||||||    
T  16118981 aattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagt 16119061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 501
Target Start/End: Original strand, 432071 - 432114
Alignment:
Q  458 gtaaaagacgaaaatgcttctgcgacagttaactaccgaagttt 501  Q
    ||||||||| |||||||  |||||||||||||||||||||||||    
T  432071 gtaaaagacaaaaatgcccctgcgacagttaactaccgaagttt 432114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 28138363 - 28138312
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||||||||||| ||||||||  ||| |||||||||| ||||||    
T  28138363 ctgcgacagttaactaccgatgtttggaaccggctgcagttaactcccgaag 28138312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 526
Target Start/End: Complemental strand, 39378385 - 39378343
Alignment:
Q  484 agttaactaccgaagtttggaattggccgcagttaactaccga 526  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||    
T  39378385 agttaactaccgaagtttggaatcggctgcagttaactgccga 39378343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 16211878 - 16211825
Alignment:
Q  443 ggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccga 496  Q
    |||||||||| || ||||||||||| ||||||| | ||| ||||||||||||||    
T  16211878 ggctgaaaaataccagtaaaagacgtaaatgctccagcggcagttaactaccga 16211825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 528
Target Start/End: Original strand, 17688288 - 17688332
Alignment:
Q  484 agttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||| |||||||||||  ||| |||||||||||||||||    
T  17688288 agttaactactgaagtttggaaccggctgcagttaactaccgaag 17688332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 42176015 - 42176071
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    |||||||||||  |||||||   ||||||||||||||||||||||||| || |||||    
T  42176015 gagaattgctgaatacacatttgataaggctgaaaaacactagtaaaataccaaaat 42176071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 274 - 412
Target Start/End: Complemental strand, 9043929 - 9043787
Alignment:
Q  274 tataagaaattataaaaagataatgattataatttttactatttaggttgaaatatctatccaaattatcaacttacaatagtaaat----aatatttat 369  Q
    |||||||||||||||||| ||||| ||||||  | ||||||||||||||||||||| |||||||| | ||||||||||||||||| |    | ||  |||    
T  9043929 tataagaaattataaaaacataataattatatatattactatttaggttgaaatatatatccaaaatgtcaacttacaatagtaagtgtcaattacctat 9043830  T
Q  370 tacttagataaatgccaaattagaatagtgaaacaaataattt 412  Q
    ||| ||  |||||||||||||||||||||  ||||||||||||    
T  9043829 tacctatgtaaatgccaaattagaatagtagaacaaataattt 9043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 523
Target Start/End: Complemental strand, 19804736 - 19804629
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||||||| |||| |||||||  ||| | |||||||||||  ||||||||||||||||||  ||||||| ||||||||||||||||||||  ||| ||||    
T  19804736 gagaattgttgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcag 19804637  T
Q  516 ttaactac 523  Q
    ||||||||    
T  19804636 ttaactac 19804629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 4997966 - 4997854
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||| |||||||||||||||   ||| |||||||||||||  |||||||||||||||||  |||||  || |||||||||||||||| ||| ||| ||||    
T  4997966 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagctaactaccgaagtttgaaatcggctgcag 4997867  T
Q  516 ttaactaccgaag 528  Q
    ||||||| |||||    
T  4997866 ttaactatcgaag 4997854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 416 - 527
Target Start/End: Original strand, 31873335 - 31873446
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||||||| |||| ||||||   |||||||||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||| |||  | | ||||    
T  31873335 gagaattgttgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcag 31873434  T
Q  516 ttaactaccgaa 527  Q
    ||||||| ||||    
T  31873435 ttaactatcgaa 31873446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 415 - 500
Target Start/End: Original strand, 35200195 - 35200280
Alignment:
Q  415 cgagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtt 500  Q
    ||||| |||||||||||||||   ||| |||||||||||||  ||||||||||||||||| ||||||  |||||||||||||||||    
T  35200195 cgagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggtagttaactaccgaagtt 35200280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 46088917 - 46088998
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaa 497  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||  |  || |||||||||||||||    
T  46088917 gagaattgttgtttacacatgttataaggctgagaaacactagtaaaagacaaaaatgccccctcgccagttaactaccgaa 46088998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 46741515 - 46741434
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaa 497  Q
    |||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||   || ||||| ||||||||||||    
T  46741515 gagaattgctctttacacatgttataagactgagaaacactagtaaaagacgaaaatgtcccttcgacaattaactaccgaa 46741434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 35200900 - 35200787
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaag-tttggaattggccgca 514  Q
    |||||||| |||||||||||   ||| |||||||||||||  |||||||| ||||||||  ||||| |||||| ||||||||| |||| ||  ||| |||    
T  35200900 gagaattgttgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgca 35200801  T
Q  515 gttaactaccgaag 528  Q
    ||||||||||||||    
T  35200800 gttaactaccgaag 35200787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 527
Target Start/End: Complemental strand, 31873927 - 31873849
Alignment:
Q  449 aaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaa 527  Q
    |||||||  ||||||||||||||| | ||| || |||||||||||||| ||||||||  ||| ||||||||||||||||    
T  31873927 aaaacacatgtaaaagacgaaaatacctctacggcagttaactaccgatgtttggaaccggctgcagttaactaccgaa 31873849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 474
Target Start/End: Complemental strand, 46089784 - 46089726
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgc 474  Q
    |||||||||| || ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  46089784 gagaattgcttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgc 46089726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 501
Target Start/End: Original strand, 4997289 - 4997374
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagttt 501  Q
    ||||||||||||||||||||   ||| || ||||||||||  ||||||||||||||| |  || || |||||||||||||||||||    
T  4997289 gagaattgctgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttt 4997374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 35552677 - 35552628
Alignment:
Q  309 ttactatttaggttgaaatatctatccaaattatcaacttacaatagtaa 358  Q
    |||||||||||||||||||||  ||||||| | |||||||||||||||||    
T  35552677 ttactatttaggttgaaatatacatccaaaatgtcaacttacaatagtaa 35552628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 45350841 - 45350897
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    ||||||||||||||||||||| |||||| |||| |||||| ||||||| || |||||    
T  45350841 gagaattgctgtttacacatgttataagactgagaaacaccagtaaaataccaaaat 45350897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 521
Target Start/End: Complemental strand, 40323709 - 40323665
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaact 521  Q
    ||||| |||||||||||||||||||||||  ||| ||||||||||    
T  40323709 ctgcggcagttaactaccgaagtttggaaccggctgcagttaact 40323665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 17502 - 17390
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||   |  || ||||||||||||||| |   |||  ||| ||||    
T  17502 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcag 17403  T
Q  516 ttaactaccgaag 528  Q
    |||||||||||||    
T  17402 ttaactaccgaag 17390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 16854 - 16939
Alignment:
Q  443 ggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||||  |||||||||||||||||  |||||  ||||||||||||||||||||||  ||  |||||||||||||||||    
T  16854 ggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagtttggaaccggttgcagttaactaccgaag 16939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 527
Target Start/End: Original strand, 33205418 - 33205529
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    |||| |||||||||||||||   ||| |||||||||||||  ||||||||||||||||| |||||| |||||| ||||||||||||||||  ||| | ||    
T  33205418 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtag 33205517  T
Q  516 ttaactaccgaa 527  Q
    |||||| |||||    
T  33205518 ttaactgccgaa 33205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 445 - 528
Target Start/End: Complemental strand, 52427603 - 52427520
Alignment:
Q  445 ctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  52427603 ctgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagttaactatcgaag 52427520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 521
Target Start/End: Complemental strand, 15660365 - 15660260
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcag 515  Q
    ||||||||||||| ||||||   ||| |||||||||||||   |||| ||||||||||||  |||| |||||||||||||| ||||||||  ||| ||||    
T  15660365 gagaattgctgttgacacatatgatagggctgaaaaacacatataaatgacgaaaatgctcatgcggcagttaactaccgatgtttggaaccggctgcag 15660266  T
Q  516 ttaact 521  Q
    ||||||    
T  15660265 ttaact 15660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 499
Target Start/End: Complemental strand, 10974861 - 10974777
Alignment:
Q  415 cgagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagt 499  Q
    ||||||||| |||| ||||||   ||| |||||||||||||   |||||||||||||||| |||||||||||||||||| |||||    
T  10974861 cgagaattgttgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagt 10974777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 505
Target Start/End: Original strand, 21263308 - 21263392
Alignment:
Q  421 ttgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaa 505  Q
    |||||||||||| ||   ||| |||||||||||||  |||||||| |||||| |  ||||| |||||||||||||||||||||||    
T  21263308 ttgctgtttacatatatgatagggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaa 21263392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 18917313 - 18917264
Alignment:
Q  309 ttactatttaggttgaaatatctatccaaattatcaacttacaatagtaa 358  Q
    |||||||||||||||||||||||||||| | | |||||||| ||||||||    
T  18917313 ttactatttaggttgaaatatctatccataatgtcaacttataatagtaa 18917264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 32161370 - 32161321
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccga 526  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||||||    
T  32161370 ctgcggcagttaactaccgaagtttggaaccggctgcagttaactaccga 32161321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 253348 - 253304
Alignment:
Q  484 agttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||    
T  253348 agttaactaccgaagtttggaaccggctgcagttaactaccgaag 253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 32160727 - 32160778
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||| ||||||    
T  32160727 ctgcggcagttaactaccgaagtttggaaccggctgcagttaacttccgaag 32160778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 33206081 - 33206030
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||| ||||||| |||||||||||||||  ||| |||||||||||||||||    
T  33206081 ctgcggcagttaattaccgaagtttggaaccggctgcagttaactaccgaag 33206030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 528
Target Start/End: Original strand, 20114607 - 20114651
Alignment:
Q  484 agttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||||    
T  20114607 agttaactaccgaagttgggaaccggctgcagttaactaccgaag 20114651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 46320524 - 46320480
Alignment:
Q  484 agttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||||    
T  46320524 agttaactaccgaagtttgaaaccggctgcagttaactaccgaag 46320480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 501
Target Start/End: Original strand, 11534 - 11619
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagttt 501  Q
    |||| |||||||||||| ||   ||| ||||||||||||   |||||||||||||||||| ||||| |||||||||| ||||||||    
T  11534 gagagttgctgtttacatatatgatagggctgaaaaacatatgtaaaagacgaaaatgctcctgcggcagttaactatcgaagttt 11619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 29413403 - 29413303
Alignment:
Q  430 acacatgctataaggctgaaaaacactagtaaaagacgaaaa--tgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaa 527  Q
    |||||| | ||| |||||||||||||  ||||||| ||||||  ||  | |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  29413403 acacatacgatagggctgaaaaacacatgtaaaaggcgaaaaaatgtctttgcggcagttaactatcgaagtttgaaattggctgcagttaactaccgaa 29413304  T
Q  528 g 528  Q
    |    
T  29413303 g 29413303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 39742509 - 39742565
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    ||||||||||||||||||||| |||| |||||| |||||| ||||||| || |||||    
T  39742509 gagaattgctgtttacacatgttatagggctgagaaacaccagtaaaataccaaaat 39742565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 42098237 - 42098293
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    ||||||||||||||||||||| ||||||||||| |||||  ||||||| || |||||    
T  42098237 gagaattgctgtttacacatgttataaggctgagaaacatcagtaaaataccaaaat 42098293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 35777094 - 35777044
Alignment:
Q  476 tctgcgacagttaactaccgaagtttggaattggccgcagttaactaccga 526  Q
    |||||| |||||||||||||||||||||||  ||| |||||||||| ||||    
T  35777094 tctgcggcagttaactaccgaagtttggaaccggctgcagttaactgccga 35777044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 6268159 - 6268106
Alignment:
Q  419 aattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    ||||||||| |||||||| ||||||||||||||| ||   ||||||||||||||    
T  6268159 aattgctgtatacacatgttataaggctgaaaaatacctataaaagacgaaaat 6268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 18848124 - 18848039
Alignment:
Q  443 ggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    |||||||||||||  |||||||||||||||||  ||||   | ||||||||||||||||  ||  | | |||||||||||||||||    
T  18848124 ggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtaattaactaccgaagtttaaaaccgactgcagttaactaccgaag 18848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 20421856 - 20421933
Alignment:
Q  419 aattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccga 496  Q
    |||| ||||| ||||||  |||||| ||||||||||| |||||||||||  ||||| ||| || ||||||||| ||||    
T  20421856 aattactgttgacacatcatataagactgaaaaacaccagtaaaagacgtcaatgcctctacggcagttaactgccga 20421933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 35776652 - 35776733
Alignment:
Q  421 ttgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatg-cttctgcgacagttaactaccgaagttt 501  Q
    |||||||||||||||   ||| ||||||||||||   |||||||||||||||| |  ||||| |||||||||| ||||||||    
T  35776652 ttgctgtttacacatatgatagggctgaaaaacatatgtaaaagacgaaaatgccccctgcggcagttaactatcgaagttt 35776733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 29429967 - 29430011
Alignment:
Q  419 aattgctgtttacacatgctataaggctgaaaaacactagtaaaa 463  Q
    |||||||||| ||||||| |||| ||||||||||||| |||||||    
T  29429967 aattgctgttcacacatgttatagggctgaaaaacaccagtaaaa 29430011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 30966781 - 30966725
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaat 472  Q
    |||||||| ||| |||||||| || | |||||| ||||||||||||||||| |||||    
T  30966781 gagaattgttgtatacacatgttaaagggctgagaaacactagtaaaagaccaaaat 30966725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 474
Target Start/End: Original strand, 5722991 - 5723049
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgc 474  Q
    |||||||||| || ||||||  ||||||||||| |||||| ||||||||||||||||||    
T  5722991 gagaattgcttttgacacataatataaggctgagaaacaccagtaaaagacgaaaatgc 5723049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 19758002 - 19757918
Alignment:
Q  416 gagaattgctgtttacacatgctataaggctgaaaaacactagtaaaagacgaaaatgcttctgcgacagttaactaccgaagtt 500  Q
    ||||||||||||| ||||||   ||| |||||||||| ||   |||||||||||||| || ||||  ||||||||||||||||||    
T  19758002 gagaattgctgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagtt 19757918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 11687970 - 11687919
Alignment:
Q  477 ctgcgacagttaactaccgaagtttggaattggccgcagttaactaccgaag 528  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||||| ||||||    
T  11687970 ctgcggcagttaactaccgaagtttggaatcggctgcaattaactcccgaag 11687919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 30763287 - 30763331
Alignment:
Q  448 aaaaacactagtaaaagacgaaaatgcttctgcgacagttaacta 492  Q
    |||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  30763287 aaaaacaccagtaaaagacgtaaatgctcctgcggcagttaacta 30763331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 18007 - 18105
Alignment:
Q  321 ttgaaatatctatccaaattatcaacttacaatagtaaat----aatatttattacttagataaatgccaaattagaatagtgaaacaaataatttcac 415  Q
    |||||||||||||||||| | |||| |||||||||||| |    | ||  |||||| ||  |||||| |||||||||||||| ||||||||||||||||    
T  18007 ttgaaatatctatccaaagtgtcaatttacaatagtaagtgtcaattacctattacctatgtaaatgtcaaattagaatagtaaaacaaataatttcac 18105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University