View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1843_low_3 (Length: 517)
Name: NF1843_low_3
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1843_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 49350305 - 49350805
Alignment:
| Q |
1 |
cttcctccaaggttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctc |
100 |
Q |
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| T |
49350305 |
cttcctccaatgttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctc |
49350404 |
T |
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| Q |
101 |
agcttctccatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaaattctcagagtcccccattt |
200 |
Q |
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| T |
49350405 |
agcttctgcatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaaattctcagagtcccccattt |
49350504 |
T |
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| Q |
201 |
tcattaatgcaa-tccattaatgtttaattttatattagagtaatttacttgacttcattctctgtataaaaatataaccctaaacagttcatgaatctg |
299 |
Q |
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| T |
49350505 |
tcattaatgcaactccattaatgtttaattttatattagagtaatttacttgacttcattctctgtataaaaatataaccctaaacagttcatgaatttg |
49350604 |
T |
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| Q |
300 |
ctttggtaactaatcttcagtgctaaaaaattttagtgttgttacaaaaatattcacttcattccctttatggaaaatgtccacttttgatgctgatggt |
399 |
Q |
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| T |
49350605 |
ctctggtaactaatcttcagtgctaaatttttttagtgttgttacaaaaatattcacttcattccctttatggaaaatgtccacttttgatgctgatggt |
49350704 |
T |
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| Q |
400 |
gctttttaatgcccttgctgatctttgctcaaagattttctcctttacattatgtgtaccacatgtgtttttaagttaaaagtcaattttcgccaccgca |
499 |
Q |
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| T |
49350705 |
gcttttaaatgcccttgctgatctttgctcaaagattttctcctttacattatgtgtaccacatgtgtttttaagttaaaagtcaattttcgccaccgca |
49350804 |
T |
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| Q |
500 |
t |
500 |
Q |
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| T |
49350805 |
t |
49350805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 36663734 - 36663822
Alignment:
| Q |
21 |
cacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctcagcttctccatccttt |
116 |
Q |
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||||||||| ||||||||||||||| || |||| ||| ||| ||||||||| |||| |||||||||||||||||||||||| | |||||| |
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| T |
36663734 |
cacaagtatttgattgaactaaagaagactgaagttgtgatataatctttg-------acatgggttctttaagtgcctcagcttctgcttccttt |
36663822 |
T |
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