View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1843_low_7 (Length: 283)

Name: NF1843_low_7
Description: NF1843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1843_low_7
NF1843_low_7
[»] chr3 (12 HSPs)
chr3 (7-269)||(53493801-53494064)
chr3 (19-94)||(16072929-16073004)
chr3 (47-113)||(402458-402524)
chr3 (48-115)||(9832672-9832739)
chr3 (52-115)||(18405752-18405815)
chr3 (214-256)||(16073136-16073178)
chr3 (45-115)||(20170628-20170698)
chr3 (44-106)||(25447158-25447220)
chr3 (66-152)||(31365123-31365208)
chr3 (49-115)||(39980815-39980881)
chr3 (50-115)||(43046751-43046815)
chr3 (50-114)||(26990144-26990208)
[»] chr8 (15 HSPs)
chr8 (47-120)||(38602408-38602481)
chr8 (47-161)||(30251370-30251483)
chr8 (66-115)||(1058012-1058061)
chr8 (39-115)||(43717842-43717918)
chr8 (47-121)||(12496988-12497062)
chr8 (67-161)||(32840922-32841015)
chr8 (47-117)||(35534529-35534599)
chr8 (210-246)||(14280490-14280526)
chr8 (52-102)||(12010979-12011029)
chr8 (49-115)||(36963272-36963338)
chr8 (43-77)||(43043792-43043826)
chr8 (42-78)||(12224809-12224845)
chr8 (71-115)||(28763454-28763498)
chr8 (210-258)||(29168141-29168189)
chr8 (67-115)||(35749506-35749554)
[»] chr7 (11 HSPs)
chr7 (52-115)||(18765370-18765433)
chr7 (47-161)||(5947282-5947395)
chr7 (42-115)||(36517663-36517736)
chr7 (47-115)||(4970708-4970776)
chr7 (47-115)||(18962499-18962567)
chr7 (40-112)||(19302472-19302544)
chr7 (51-115)||(34464141-34464205)
chr7 (211-258)||(4970878-4970925)
chr7 (50-121)||(35056755-35056826)
chr7 (52-112)||(9210910-9210970)
chr7 (57-113)||(43694494-43694550)
[»] chr6 (4 HSPs)
chr6 (42-161)||(848030-848147)
chr6 (50-115)||(10645304-10645369)
chr6 (57-161)||(2455032-2455132)
chr6 (47-104)||(35069528-35069585)
[»] chr2 (11 HSPs)
chr2 (50-115)||(30331837-30331902)
chr2 (48-115)||(26143559-26143624)
chr2 (40-115)||(15305760-15305835)
chr2 (49-115)||(28677577-28677644)
chr2 (47-161)||(45229552-45229665)
chr2 (46-115)||(27317465-27317534)
chr2 (47-117)||(4607009-4607079)
chr2 (53-115)||(31561664-31561726)
chr2 (49-94)||(18179056-18179101)
chr2 (43-92)||(39659421-39659470)
chr2 (47-115)||(42419879-42419947)
[»] chr1 (8 HSPs)
chr1 (50-115)||(50644174-50644239)
chr1 (49-115)||(33204312-33204378)
chr1 (47-115)||(2295182-2295250)
chr1 (53-108)||(15784410-15784465)
chr1 (66-121)||(29904831-29904886)
chr1 (49-115)||(3233933-3233999)
chr1 (42-112)||(36872817-36872887)
chr1 (101-161)||(37473444-37473503)
[»] chr5 (11 HSPs)
chr5 (49-161)||(3932594-3932705)
chr5 (50-115)||(34736446-34736511)
chr5 (47-115)||(15246919-15246987)
chr5 (51-114)||(9107177-9107240)
chr5 (47-161)||(6521118-6521232)
chr5 (126-160)||(34669724-34669758)
chr5 (66-115)||(12425659-12425708)
chr5 (66-115)||(15015929-15015978)
chr5 (50-115)||(39594893-39594958)
chr5 (47-108)||(40426858-40426919)
chr5 (210-246)||(10639898-10639934)
[»] chr4 (12 HSPs)
chr4 (49-161)||(13126494-13126605)
chr4 (47-115)||(21731572-21731640)
chr4 (47-115)||(29388700-29388768)
chr4 (47-161)||(25904139-25904252)
chr4 (49-121)||(8705021-8705093)
chr4 (51-111)||(15173223-15173283)
chr4 (47-115)||(54426129-54426197)
chr4 (49-112)||(27043748-27043811)
chr4 (56-115)||(40174643-40174702)
chr4 (47-114)||(53294030-53294097)
chr4 (49-115)||(49940085-49940151)
chr4 (47-112)||(39691065-39691130)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 53493801 - 53494064
Alignment:
Q  7 gtaacaaaggcgaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttg 106  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53493801 gtaacaaaagcaaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagattgtttg 53493900  T
Q  107 ggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttatcttatgagttatatgaatgaaaacaactttagcatatat-nnnnn 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  53493901 ggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttatcttatgagttatatgaatgaaaacaactttagcatatataaaaac 53494000  T
Q  206 nntgtaatttaattttaccttttgctatagaaataggttatgtaagattatacgcgttaataat 269  Q
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  53494001 aatgtaatttaattttaccttttactataaaaataggttatgtaagattatacgcgttaataat 53494064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 16072929 - 16073004
Alignment:
Q  19 aaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttg 94  Q
    ||||||| |||||||||||||||||||  |||||||||||||| || |||||||||||||||| ||||||||||||    
T  16072929 aaagggatatgtacattgcacacttaggacctgtttggattgacttatttgagcttatctaatgacataagttttg 16073004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 402458 - 402524
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 113  Q
    |||||||||| ||||  | |||||| ||||| | | |||||||||||||||||||||||||||||||    
T  402458 gcctgtttgggttgacctatttgagtttatcaactaacataagttttgcaagactgtttgggagaac 402524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 9832672 - 9832739
Alignment:
Q  48 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||| |||||| || ||||||||||| || | ||||||||||||  | |||||||||||||||||    
T  9832672 cctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaactt 9832739  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 18405752 - 18405815
Alignment:
Q  52 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  ||||||||||  |||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaactt 18405815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 16073136 - 16073178
Alignment:
Q  214 ttaattttaccttttgctatagaaataggttatgtaagattat 256  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||    
T  16073136 ttaattttaacttttgctatagaaatagcttatgcaagattat 16073178  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 20170628 - 20170698
Alignment:
Q  45 gagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||||||  || |||||||||||||| | |||||||||| |  ||||||||||  |||||||    
T  20170628 gagcctgtttggattggcttatttgagcttatctagtgacataagtttagtgagactgtttgttagaactt 20170698  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 25447158 - 25447220
Alignment:
Q  44 agagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttg 106  Q
    |||| ||||||||||||| || |||||| ||||||| | ||||||||||||  ||||||||||    
T  25447158 agagtctgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 31365123 - 31365208
Alignment:
Q  66 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagcttttt 152  Q
    |||||||||||||| |  |||||||||||  ||||||||||||||||||| | |||  |  || |||||| ||||||||||||||||    
T  31365123 tttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaa-gcagcttatgacaattttcataagcttttt 31365208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 39980881 - 39980815
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||  ||||||||||||||||| |  |||||||||||  |||||||||  ||||||||    
T  39980881 ctgtttggattggcttgtttgagcttatctactagcataagttttgtgagactgtttaagagaactt 39980815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 43046815 - 43046751
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||| |||||| || ||||| |||||||| ||||||| ||||||  |||||||||||||||||||    
T  43046815 tgtttagattgacttatttgaacttatcta-ttacatatgttttgtgagactgtttgggagaactt 43046751  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 26990144 - 26990208
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 114  Q
    |||||||||||| || |||||||||||||| | ||||| | ||||| | | ||||||||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacataggctttgcgatattgtttgggagaact 26990208  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 38602481 - 38602408
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaa 120  Q
    ||||||||||||||| || |||||||||||||| | ||||||||||||  || |||||||||||||||| ||||    
T  38602481 gcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaacttataaa 38602408  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 30251370 - 30251483
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 146  Q
    ||||||||||||||  || |||||||||||||| | |||||||||| |  |||||||||||||||||||   |||  |  || ||  |||||||||||||    
T  30251370 gcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaa-acagcttattgcatttttcataag 30251468  T
Q  147 ctttttacagcttat 161  Q
    |||||||||||||||    
T  30251469 ctttttacagcttat 30251483  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 1058012 - 1058061
Alignment:
Q  66 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  1058012 tttgagcttatctacttacataagttttgtgagactgtttgggagaactt 1058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 43717842 - 43717918
Alignment:
Q  39 cacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||| |||| |||||||||  || |||||||||||||| | ||||||||||||  ||||| |||||||||||||    
T  43717842 cacttagggcctatttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaactt 43717918  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 12496988 - 12497062
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 121  Q
    |||| ||||||||||||| |||||||||||||  |  |||||||||||  |||||||||| |||||||| |||||    
T  12496988 gcctatttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaacttctaaaa 12497062  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 32840922 - 32841015
Alignment:
Q  67 ttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttat 161  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||||||||| | |||  | ||| |||||||| |||||||| | ||| ||||||||    
T  32840922 ttgagcttatctactcacacaagttttgcgagactgtttgggagaacttatgaaa-acaacttatgacattgttcataagttgttttcagcttat 32841015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 35534529 - 35534599
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 117  Q
    |||||||| || ||| || |||||||||||||| | ||||||||||||  |||||||||| ||||||||||    
T  35534529 gcctgtttagaatgacttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgt 35534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 14280490 - 14280526
Alignment:
Q  210 taatttaattttaccttttgctatagaaataggttat 246  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14280490 taatttaattttatcttttgctatagaaataggttat 14280526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 12011029 - 12010979
Alignment:
Q  52 tttggattgatttgtttgagcttatctaattacataagttttgcaagactg 102  Q
    |||||||||| || |||||||||||||||||||||| ||||| | ||||||    
T  12011029 tttggattgacttatttgagcttatctaattacatatgttttacgagactg 12010979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 36963272 - 36963338
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||  || |||||||| ||||| |  |||||||||||  |||||||||||||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaactt 36963338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 43043826 - 43043792
Alignment:
Q  43 tagagcctgtttggattgatttgtttgagcttatc 77  Q
    ||||||||||||||||||| |||||||||||||||    
T  43043826 tagagcctgtttggattgacttgtttgagcttatc 43043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 12224809 - 12224845
Alignment:
Q  42 ttagagcctgtttggattgatttgtttgagcttatct 78  Q
    |||||||||||||||||||| || |||||||||||||    
T  12224809 ttagagcctgtttggattgaattatttgagcttatct 12224845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 28763498 - 28763454
Alignment:
Q  71 gcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||| | ||||||||||||  |||||||||||||||||||    
T  28763498 gcttatctagtaacataagttttgtgagactgtttgggagaactt 28763454  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 29168141 - 29168189
Alignment:
Q  210 taatttaattttaccttttgctatagaaataggttatgtaagattatac 258  Q
    |||||| |||||| |||||||||||||||||| |||||| || ||||||    
T  29168141 taattttattttatcttttgctatagaaatagcttatgtgagcttatac 29168189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 35749506 - 35749554
Alignment:
Q  67 ttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||| | ||||||||||||| || ||||||| ||||||||    
T  35749506 ttgagcttatctattgacataagttttgcgaggctgtttgagagaactt 35749554  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 18765433 - 18765370
Alignment:
Q  52 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtgagactgtttgggagaactt 18765370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 5947395 - 5947282
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 146  Q
    ||||||||||||||  || |||||||||||||| |   |||||||||   ||||||||||| ||||||| | |||||   || ||||||||||||||| |    
T  5947395 gcctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccag-cttatgacatttttcatatg 5947297  T
Q  147 ctttttacagcttat 161  Q
    |||||||||||||||    
T  5947296 ctttttacagcttat 5947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 36517736 - 36517663
Alignment:
Q  42 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||| ||||||||||||| |||| |||||||||| ||| |  ||||||||||  ||||||||||||||||||||    
T  36517736 ttagggcctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaactt 36517663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 4970708 - 4970776
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||||| || |||||||||||||  | |||||||| |||  |||||||||||||||||||    
T  4970708 gcctgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaactt 4970776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 18962499 - 18962567
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||||| || || || |||||||| | ||||||||||||  ||||||||| |||||||||    
T  18962499 gcctgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaactt 18962567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 19302472 - 19302544
Alignment:
Q  40 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 112  Q
    ||||||| |||||||| ||||| || |||||||||||||| | ||||||||||||  ||| | ||||||||||    
T  19302472 acttagaacctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaa 19302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 34464141 - 34464205
Alignment:
Q  51 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||| |||||| ||||||| | |||||| |||| ||||||| |||||||| ||||    
T  34464141 gtttggattgatttatttgagtttatctattgacataaattttacaagactttttgggaggactt 34464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 4970878 - 4970925
Alignment:
Q  211 aatttaattttaccttttgctatagaaataggttatgtaagattatac 258  Q
    ||||| |||||| |||||||||||||||||| ||||||||| ||||||    
T  4970878 aattttattttatcttttgctatagaaatagcttatgtaagcttatac 4970925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 35056826 - 35056755
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 121  Q
    |||||||||||| || | |||||||||||| | ||||| |||| | || ||||||||||||||||| |||||    
T  35056826 tgtttggattgagttttctgagcttatctactaacatacgtttagtaaaactgtttgggagaacttataaaa 35056755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 9210970 - 9210910
Alignment:
Q  52 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 112  Q
    |||||||||| || |||||||||||||| | | |||||||||   ||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaa 9210910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 43694494 - 43694550
Alignment:
Q  57 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 113  Q
    |||||||| |||||| ||||||| | | ||||||||| | |||||||||||||||||    
T  43694494 attgatttatttgagtttatctactaatataagttttacgagactgtttgggagaac 43694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 848147 - 848030
Alignment:
Q  42 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttc 141  Q
    |||| ||||||||||||||  || |||||||||||||| |  |||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||||||    
T  848147 ttagggcctgtttggattgccttatttgagcttatcta-tagcataagttttgtgagactgtttggaagaacttataaaa-actgcttatgacatttttc 848050  T
Q  142 ataagctttttacagcttat 161  Q
     |||||||||| ||||||||    
T  848049 ttaagcttttttcagcttat 848030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 10645304 - 10645369
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||  |  |||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  10645304 tgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaactt 10645369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 2455132 - 2455032
Alignment:
Q  57 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacag 156  Q
    |||| ||| ||||| |||||||| | ||||||||||||  ||||||||||||||||||| | |||    ||| |||||||| ||||||| || ||| |||    
T  2455132 attggtttatttgaacttatctactaacataagttttgtgagactgtttgggagaacttctgaaa----acttatgacattgttcataacctgttttcag 2455037  T
Q  157 cttat 161  Q
    |||||    
T  2455036 cttat 2455032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 35069528 - 35069585
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtt 104  Q
    ||||||||| ||||  || |||||||||||||| | |||||||||||| |||||||||    
T  35069528 gcctgtttgtattggcttatttgagcttatctactgacataagttttgtaagactgtt 35069585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 30331902 - 30331837
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||| || ||| |||||||||| | ||||||||||||  |||||||||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaactt 30331837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 26143559 - 26143624
Alignment:
Q  48 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||  ||||||||||||||||| | |||||| |||||  |||||||||||||||||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataaattttg--agactgtttgggagaactt 26143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 15305835 - 15305760
Alignment:
Q  40 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||| ||||||||||||||  || |||||||||||||| | ||||||||||||  | ||||||||| |||||||    
T  15305835 acttagggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaactt 15305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 28677577 - 28677644
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgc-aagactgtttgggagaactt 115  Q
    |||||||||||||||| ||||||||||| || || |||||||  ||| ||||||||||||||||||||    
T  28677577 ctgtttggattgatttttttgagcttatttacttgcataagtactgctaagactgtttgggagaactt 28677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 45229665 - 45229552
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 146  Q
    |||||||||||||| ||  |||||||||||||| |  |||||||| ||| | || |||||||||||||| | |||   | || |||||||||||||| ||    
T  45229665 gcctgtttggattggttgatttgagcttatctactggcataagttatgccacaccgtttgggagaacttatgaaaagac-cttatgacatttttcattag 45229567  T
Q  147 ctttttacagcttat 161  Q
    |||||| ||||||||    
T  45229566 cttttttcagcttat 45229552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 27317534 - 27317465
Alignment:
Q  46 agcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||||| || ||||||||||||||   |||||||||||   |||||||||| ||||||||    
T  27317534 agcctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaactt 27317465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 4607079 - 4607009
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 117  Q
    ||||||||||||||  || ||||||||||||||   | ||||||||||  ||||| |||||||||||||||    
T  4607079 gcctgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgt 4607009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 31561664 - 31561726
Alignment:
Q  53 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||| || |||||| ||||||| | |||||||||||| || ||||||||||| |||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaactgtttgggaaaactt 31561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 18179101 - 18179056
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttg 94  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||    
T  18179101 ctgtttggattgacttatttgagcttatctactaacataagttttg 18179056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 39659421 - 39659470
Alignment:
Q  43 tagagcctgtttggattgatttgtttgagcttatctaattacataagttt 92  Q
    ||||||||||||||||||  ||| ||||||||||||| | ||||||||||    
T  39659421 tagagcctgtttggattggcttgcttgagcttatctactgacataagttt 39659470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 42419947 - 42419879
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||| |||||||||| || |||||| ||||||  | |||||||||||   |||||||||||||||||||    
T  42419947 gcctttttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaactt 42419879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 50644174 - 50644239
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||  |||||||||||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaactt 50644239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 33204312 - 33204378
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||| ||| || || |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  33204312 ctgtttagatcgacttatttgagcttatctactgacataagttttgtgagactgtttgggagaactt 33204378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 2295250 - 2295182
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||| ||||  || |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaactt 2295182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 15784465 - 15784410
Alignment:
Q  53 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 108  Q
    |||||| || || |||||||||||||| | |||||||||||| |||||||||||||    
T  15784465 ttggatcgacttatttgagcttatctactaacataagttttgtaagactgtttggg 15784410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 29904886 - 29904831
Alignment:
Q  66 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 121  Q
    |||||||||||||| || |||||||||||  |||||||||| |||||||| |||||    
T  29904886 tttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaa 29904831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 3233933 - 3233999
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||| || |||||||||||||| |  | |||||||||  |||||||| ||||||||||    
T  3233933 ctgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaactt 3233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 36872887 - 36872817
Alignment:
Q  42 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 112  Q
    |||| ||||||||||||||  || ||| |||||| ||||  ||||||||||||| ||||||||| ||||||    
T  36872887 ttagggcctgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaa 36872817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 37473503 - 37473444
Alignment:
Q  101 tgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttat 161  Q
    ||||||||||||||| | ||| |  ||| ||||||||||||||||||||||| ||||||||    
T  37473503 tgtttgggagaacttttgaaaaca-acttatgacatttttcataagctttttccagcttat 37473444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 3932594 - 3932705
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagct 148  Q
    ||||||||||||| |  |||||||||||||||  ||||||| ||||  |||||||||| || |||||| ||||  |  || |||| | ||||||||||||    
T  3932594 ctgtttggattgactaatttgagcttatctaacaacataagctttgtgagactgtttgagaaaacttgcaaaa-acagcttatgataattttcataagct 3932692  T
Q  149 ttttacagcttat 161  Q
    |||||||||||||    
T  3932693 ttttacagcttat 3932705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 34736446 - 34736511
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||| || |||||||||||||  | ||||||||||||  |||| ||||||||||||||    
T  34736446 tgtttggattgacttatttgagcttatctggtgacataagttttgtgagacagtttgggagaactt 34736511  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 15246987 - 15246919
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||  ||| |||||||||||||| | |||||||||||   ||| |||||||||||||||    
T  15246987 gcctgtttggatttgtttatttgagcttatctactgacataagttttattagaatgtttgggagaactt 15246919  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 9107240 - 9107177
Alignment:
Q  51 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 114  Q
    ||||||||||| || |||||| ||||||| | ||||||||||||  ||| ||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaact 9107177  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 6521232 - 6521118
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 146  Q
    ||||||||||||||| || || ||||| | ||| | ||||| ||||||  ||| ||||||||||||||| | ||| |  ||| |||||| |||||| |||    
T  6521232 gcctgtttggattgacttattagagctgaactactgacatatgttttgtgagattgtttgggagaacttatgaaaacggacttatgacaattttcacaag 6521133  T
Q  147 ctttttacagcttat 161  Q
    |||||| | ||||||    
T  6521132 cttttttcggcttat 6521118  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 34669724 - 34669758
Alignment:
Q  126 actaatgacatttttcataagctttttacagctta 160  Q
    ||||||||||||||||||||||||||| |||||||    
T  34669724 actaatgacatttttcataagcttttttcagctta 34669758  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 12425708 - 12425659
Alignment:
Q  66 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  12425708 tttgagcttatctactgtcataagttttgtgagactgtttgggagaactt 12425659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 15015978 - 15015929
Alignment:
Q  66 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||| | ||||||| ||||  |||||||||||||||||||    
T  15015978 tttgagcttatctactgacataagctttgtgagactgtttgggagaactt 15015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 39594958 - 39594893
Alignment:
Q  50 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||| || ||||||||||||||   ||||||||||||  ||| ||||||||| |||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataagttttgttagattgtttgggacaactt 39594893  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 40426919 - 40426858
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 108  Q
    |||||||| | |||| || |||||||||||||||| |||||| |||||  ||||||||||||    
T  40426919 gcctgttttggttgacttatttgagcttatctaatgacataaattttgtgagactgtttggg 40426858  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 10639934 - 10639898
Alignment:
Q  210 taatttaattttaccttttgctatagaaataggttat 246  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  10639934 taatttaattttatcttttgctatagaaatagcttat 10639898  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 13126494 - 13126605
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagct 148  Q
    ||||||||||||  || ||| |||||| ||| | ||||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||| |||||||||    
T  13126494 ctgtttggattggcttattttagcttacctactaacataagttttgtgagactgtttggaagaacttataaaa-acagcttatgacatttatcataagct 13126592  T
Q  149 ttttacagcttat 161  Q
    |||| ||||||||    
T  13126593 tttttcagcttat 13126605  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 21731572 - 21731640
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||||||| ||| ||||||| |||||| | ||||||||||||  ||| |||||||||||||||    
T  21731572 gcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaactt 21731640  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 29388768 - 29388700
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    |||||||||| |||| || ||||| |||||||| | |||||||||||| |||| |||||||||||||||    
T  29388768 gcctgtttgggttgacttatttgaccttatctactaacataagttttgtaagattgtttgggagaactt 29388700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 25904139 - 25904252
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 146  Q
    |||||||| | |||| || |||||||||||| ||| |||||| |||||  ||||||||||||||| ||| | |||  |  || ||| |||||||||||||    
T  25904139 gcctgttttggttgacttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaa-acagcttatgccatttttcataag 25904237  T
Q  147 ctttttacagcttat 161  Q
    |||||| ||||||||    
T  25904238 cttttttcagcttat 25904252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 8705093 - 8705021
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 121  Q
    ||||||||||||  |  |||||||||||||| | ||||||||||||  |||||| |||||||||||| |||||    
T  8705093 ctgtttggattggctcatttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaa 8705021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 15173223 - 15173283
Alignment:
Q  51 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggaga 111  Q
    ||||||||||| || ||||| |||||||| | ||||||||||||  |||||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggaga 15173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 54426197 - 54426129
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||||  || |||||||||||||| |  |||||||||||  |||||| ||||||||||||    
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaactt 54426129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 27043748 - 27043811
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 112  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||  | ||||||||| ||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaa 27043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 40174702 - 40174643
Alignment:
Q  56 gattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||| |||||| ||||||| | ||||||||||||  ||||||||||||| |||||    
T  40174702 gattgatttatttgagtttatctactaacataagttttgtgagactgtttgggataactt 40174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 53294030 - 53294097
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 114  Q
    ||||||||||||||| |  |||| ||||||||| | |||| ||||||| |||||||||||||| ||||    
T  53294030 gcctgtttggattgactaatttgtgcttatctactgacatgagttttgtaagactgtttgggaaaact 53294097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 49940085 - 49940151
Alignment:
Q  49 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 115  Q
    ||||||||||||| || |||||||||| ||  | ||||||||||||  |||||||||| ||||||||    
T  49940085 ctgtttggattgacttatttgagcttacctgctaacataagttttgtgagactgtttgagagaactt 49940151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 39691065 - 39691130
Alignment:
Q  47 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 112  Q
    ||||||||| ||||| || |||||||||||||| |  |||||||||||  |||||||||| |||||    
T  39691065 gcctgtttgaattgacttatttgagcttatctactagcataagttttgtgagactgtttgagagaa 39691130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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