View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_high_11 (Length: 372)
Name: NF18440_high_11
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 52881141 - 52880785
Alignment:
| Q |
1 |
gaaacaatggtaaacttaaaaacattttattttccttctttctcgcaaaaattacgaagcatttatctgaaatgagagtacgaagagacaaagaaagaaa |
100 |
Q |
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| T |
52881141 |
gaaacaatggtaaacttaaaaacattttattttccttctttctcgcaaaaattacgaagcatttatctgaaatgagagtacgaagagacaaagaaagaaa |
52881042 |
T |
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| Q |
101 |
gttaattttcattgattaattatta---attacaagagatattcatgaaagcccaagaatggagtaacctgtacacctggtaattttcccatacccattg |
197 |
Q |
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| T |
52881041 |
gttaattttcattgattaattattattaattacaagagatattcatgaaagcccaagaatggagtaacctgtacacctggtaattttcccatacccattg |
52880942 |
T |
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| Q |
198 |
aataattcacatgtcattaagttt-atatcgatgtatctttgatcattttcccagtttcattgaacaacgtgatgattcaaacttttgtaggctcgctag |
296 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52880941 |
aataattcacatgtcattaagttttatatcgatgtatctttgatcattttcccagtttcattgaacaacgtgatgattcaaacttttgtaggctcgctag |
52880842 |
T |
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| Q |
297 |
atgaacttgagtctgcattacaattccaaagagacttcatctcacctctaatgcatc |
353 |
Q |
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| T |
52880841 |
atgaacttgagtctgcattacaattccaaagagacttcatctcacctctaatgcatc |
52880785 |
T |
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