View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_high_15 (Length: 308)
Name: NF18440_high_15
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 9817048 - 9816756
Alignment:
| Q |
1 |
catatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9817048 |
catatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttcccaaaccagtcatgtcaaactcttt |
9816949 |
T |
|
| Q |
101 |
catcatttgtcttttgaattcatctacctcagataaattgctttcagtttccactaaatcatcaaaatattgatagataaacaccacataatagcatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9816948 |
catcatttgtcttttgaattcatctacctcagataaattgctttcagttttcactaaatcatcaaaatattgatagataaacaccacataatagcatttg |
9816849 |
T |
|
| Q |
201 |
ctattcttcacatacataacattttcatctttgtatttgaa-aaaatcttcttgaactagaaagttgtcaatccttttgttccaggctcttag |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9816848 |
ctattcttcacatacataacattttcatctttgtatttgaaaaaaatcttcttgaactagaaagttgtcaatccttttgttccaggctcttag |
9816756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 16944109 - 16944340
Alignment:
| Q |
4 |
atttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactctttcat |
103 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||| |||||||| ||||||||| || |||||||| |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
|
| Q |
104 |
catttgtcttttgaattc--atctacctcagataaattgctttcagtttccactaaatcatcaaaatattgatagataaacaccacataatagcatttgc |
201 |
Q |
| |
|
|||||||||||||||||| | || || || |||||||||| |||| ||||||||| ||||| |||| ||||||||| ||| | || ||| | |||| |
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| T |
16944209 |
catttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaaattatcaacatatagatagataagcacaagattataacctttgt |
16944308 |
T |
|
| Q |
202 |
tattcttcacatacataacattttcatctttg |
233 |
Q |
| |
|
|||| |||| ||||| | ||| |||| ||||| |
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| T |
16944309 |
tatttttcaaatacagaccatattcaactttg |
16944340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 17014774 - 17015005
Alignment:
| Q |
4 |
atttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactctttcat |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||| |||||||| ||||||||| || |||||||| |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
|
| Q |
104 |
catttgtcttttgaattc--atctacctcagataaattgctttcagtttccactaaatcatcaaaatattgatagataaacaccacataatagcatttgc |
201 |
Q |
| |
|
|||||||||||||||||| | || || || |||||||||| |||| ||||||||| ||||| |||| ||||||||| ||| | || ||| | |||| |
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| T |
17014874 |
catttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaaattatcaacatatagatagataagcacaagattataacctttgt |
17014973 |
T |
|
| Q |
202 |
tattcttcacatacataacattttcatctttg |
233 |
Q |
| |
|
|||| |||| ||||| | ||| |||| ||||| |
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|
| T |
17014974 |
tatttttcaaatacagaccatattcaactttg |
17015005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 271
Target Start/End: Original strand, 15490517 - 15490745
Alignment:
| Q |
43 |
tgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactctttcatcatttgtcttttgaattcatctacctcagataaattgct |
142 |
Q |
| |
|
||||||| ||| ||| ||| ||| |||| |||||||| ||| ||| ||||| ||| |||||||||||||| ||||||| ||| |||| || |||| | |
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| T |
15490517 |
tgaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcatttgtcttatgaattcttctttctcaattatattggt |
15490616 |
T |
|
| Q |
143 |
ttcagtttccactaaatcatcaaaatattgatagataaacaccacataatagcatttgctattcttcacatacataacattttcatctttgtatttgaaa |
242 |
Q |
| |
|
| ||||| |||| |||||||||| |||| || | |||| || || || | |||| ||||||||||||||| | || |||| ||||| |||||| | |
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| T |
15490617 |
tccagttaccacgaaatcatcaacatatagacaaataagcatcagatttctacctttgttattcttcacatacaaacaatattcaactttgcatttgaca |
15490716 |
T |
|
| Q |
243 |
aaatcttcttgaactagaaagttgtcaat |
271 |
Q |
| |
|
|| || | ||||||||||||||||||||| |
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| T |
15490717 |
aattcctattgaactagaaagttgtcaat |
15490745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1831735 - 1831616
Alignment:
| Q |
1 |
catatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactcttt |
100 |
Q |
| |
|
|||||||||||| |||||||||||| | | ||| |||||||||||||| |||||| |||||||||||| |||||||| ||||||| ||||| ||| | |
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|
| T |
1831735 |
catatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatctcaaattctgt |
1831636 |
T |
|
| Q |
101 |
catcatttgtcttttgaatt |
120 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
1831635 |
catcatttgtcttttgaatt |
1831616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 11753462 - 11753558
Alignment:
| Q |
90 |
tcaaactctttcatcatttgtcttttgaattcatctacctcagataaattgctttcagtttccactaaatcatcaaaatattgatagataaacacca |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| ||||| |||||||||| ||| |||||| || ||||| |||| || |||||| ||||| |
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|
| T |
11753462 |
tcaaactctttcatcatctgtcttttgaattattctatctcaggtaaattgcttctagtgaccactagataatcaacatatagacagataagcacca |
11753558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 15566058 - 15566151
Alignment:
| Q |
197 |
tttgctattcttcacatacataacattttcatctttgtatttgaaaaaatcttcttgaactagaaagttgtcaatccttttgttccaggctctt |
290 |
Q |
| |
|
||||||||| |||||||| | | ||| |||| ||||| |||||| ||| | || || || ||||||||||||||||| || |||||||||||| |
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|
| T |
15566058 |
tttgctatttttcacatagacaccatattcagctttgcatttgacaaagtattgctgcacaagaaagttgtcaatcctcttattccaggctctt |
15566151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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