View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_high_19 (Length: 250)
Name: NF18440_high_19
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 9817311 - 9817074
Alignment:
| Q |
13 |
aatatgtcataatctagagttcctttgaagtatctcattactttcttgttgcaagcaagcgagagcttctaggttcacccatgaacctactaattatacc |
112 |
Q |
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| T |
9817311 |
aatatgtcataatctagagttcctttgaagtatctcattactttcttgttgcaagcaagcgagagcttctaggttcacccatgaacctactaattatacc |
9817212 |
T |
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| Q |
113 |
aactagctattgtacaaatatctaatagatcctaaaatttatttgaacaatgtaggatcaactagctcgtaatcttcattattcacaagtttcagtttta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9817211 |
aactagctattgtacaaatatctaatagatcctaaaatttatttgaacaatgtaggatcaactagctcgtaatctttattattcacaagtttcagtttta |
9817112 |
T |
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| Q |
213 |
cttccgttgaagtatagggagaattgaaattcattata |
250 |
Q |
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| T |
9817111 |
cttccgttgaagtatagggagaattgaaattcattata |
9817074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 23428349 - 23428452
Alignment:
| Q |
13 |
aatatgtcataatctagagttcctttgaagtatctcattactttctt-gttgcaagcaagcgagagcttctaggttcacccatgaacctactaattatac |
111 |
Q |
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|||||| |||||||||||||||| |||| | ||||||| | | | || | |||||||||| |||||||||||||||||| ||||||||| || ||||||| |
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| T |
23428349 |
aatatgccataatctagagttcccttgatgcatctcatcattgttttagctgcaagcaagtgagagcttctaggttcactcatgaacctgctgattatac |
23428448 |
T |
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| Q |
112 |
caac |
115 |
Q |
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|||| |
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| T |
23428449 |
caac |
23428452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 17507868 - 17507936
Alignment:
| Q |
148 |
aatttatttgaacaatgtaggatcaactagctcgtaatcttcattattcacaagtttcagttttacttc |
216 |
Q |
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| T |
17507868 |
aatttgtttgaacaatgtaggatcaactaactcctcatcttcattctttacaagcttcagattcacttc |
17507936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 30646683 - 30646632
Alignment:
| Q |
155 |
ttgaacaatgtaggatcaactagctcgtaatcttcattattcacaagtttca |
206 |
Q |
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| T |
30646683 |
ttgaacaaagtaggatcaactagttcctcatcttcattattcactagtttca |
30646632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 30065530 - 30065488
Alignment:
| Q |
73 |
gagagcttctaggttcacccatgaacctactaattataccaac |
115 |
Q |
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| T |
30065530 |
gagagcttctaggttcactcatgaacctgctgattataccaac |
30065488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 26455007 - 26455039
Alignment:
| Q |
84 |
ggttcacccatgaacctactaattataccaact |
116 |
Q |
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| T |
26455007 |
ggttcactcatgaacctactaattataccaact |
26455039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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