View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18440_high_3 (Length: 709)

Name: NF18440_high_3
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18440_high_3
NF18440_high_3
[»] chr2 (1 HSPs)
chr2 (17-699)||(37768859-37769540)


Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 17 - 699
Target Start/End: Original strand, 37768859 - 37769540
Alignment:
Q  17 aacaagaagaatctttatagccaaacttgttttggatcaaagcgaaattattctttacatacaagaagttcatcatctttcaagactaatattgaagaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37768859 aacaagaagaatctttatagccaaacttgttttggatcaaagcgaaattattctttacatacaagaagttcatcatctttcaagactaatattgaagaaa 37768958  T
Q  117 tcaaggcaattgaatctcctttatcaagtcnnnnnnnnnnnnnnnnnnactcaccggtgtttaattcgaagagtttatccaagtctaatgaaagccaatt 216  Q
    ||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37768959 tcaaggcaattgaatctcctttatcaagtccatcatcatcat------actcaccggtgtttaattcgaagagtttatccaagtctaatgaaagccaatt 37769052  T
Q  217 tgagaatcnnnnnnngttccattgcctaggaatatacatggtgtttctcataagcttagtagttacagtctgttggggtaaagttaatgtcattgttttg 316  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37769053 tgagaatcaaaaaaagttccattgcctaggaatatacatggtgtttctcataagcttagtagttacagtctgttggggtaaagttaatgtcattgttttg 37769152  T
Q  317 acatcaatgtttttctgttgtttttgtctttgtaacgcatgttctcgccagctaaaaagggttggtaaatctcgcaaaaatgtgagttcaactcttgctg 416  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  37769153 acatcaatgtttttctgttgtttttgtctttgcaacacatgttctcaccagctaaaaagggttggtaaatctcgcaaagatgtgagttcaactctcgctg 37769252  T
Q  417 ctggtgtggggtcacaccctcgcagctttgagccatgaggcttggctatggtgaaccccgggacccaactcacctaaccttttattcgc-----agctgc 511  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     ||||||    
T  37769253 ctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggctatggtgaaccctgggacccaactcacctaaccttttattcgcagcgtagctgc 37769352  T
Q  512 aattgcgatcgcaaccaaatcataaagatagttaaaaggggtgctcctaagaataaaaatttctttagcacaagtggaagggcacaagtttcgtgtgttg 611  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37769353 aattgcgatcacaaccaaatcataaagatagttaaaaggggtgctcctaagaataaaaatttctttagcacaagtggaagggcacaagtttcgtgtgttg 37769452  T
Q  612 ttatctattcttcccaattgggaggtagctgagattggaagaaacctgaaacatctgttcatgtcaaattttcctgctcttttctctg 699  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37769453 ttatctattcttcccaattgggaggtagctgatattggaagaaacctgaaacatctgttcatgtcaaattttcctgctcttttctctg 37769540  T

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