View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_high_9 (Length: 392)
Name: NF18440_high_9
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 21269708 - 21270085
Alignment:
| Q |
1 |
aaaaagtaatggaatctcaaaatatgaatacgtgactccttccctaaaatcaagaatcaaattaaaattgacatgagtggagcataagaaattccttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21269708 |
aaaaagtaatggaatctcaaaatatgaatacgtgactccttctctttaatcaagaatcaaattaaaattgacatgagtggagcataagaaattccttcag |
21269807 |
T |
|
| Q |
101 |
ataaatattctcacatcacacactctgtgaggtctgaaataaaagatgaagcactaatatatgatacctccctacaaagattttccctttcttccactat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21269808 |
ataaatattctcacatcacacactctgtgaggtctgaaataaaagatgaagcactaatatatgatacctccctactaagattttccctttcttccactat |
21269907 |
T |
|
| Q |
201 |
aaatactggaaaatggttaacagcttggaagcacagcagcaacattcaattctacagctaatttcattttcttcaacaaaaccaaacaaacatgtcaagc |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21269908 |
aaatactggacaatggttaacagcttggaagcacagcagcaacattcaattctacagctaatttcattttcatcaacaaaaccaaacaaacatgtcaagc |
21270007 |
T |
|
| Q |
301 |
tcatgcggcaactgcgactgcgctgacaagagccagtgcgggtaagtgctcctctatcttgtactgcaaggttgatgt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21270008 |
tcatgcggcaactgcgactgcgctgacaagagccagtgcgggtaagtgctcctctatcttgtactgcaaggttgatgt |
21270085 |
T |
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