View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18440_low_1 (Length: 973)
Name: NF18440_low_1
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 236 - 797
Target Start/End: Complemental strand, 6351428 - 6350867
Alignment:
| Q |
236 |
tttcttgttattgaatggcaactcgtgtggtcccacaaaagataatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6351428 |
tttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttc |
6351329 |
T |
|
| Q |
336 |
ggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacactaacaaccgtcttacctcgacctaaacgacggtgag |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||| |
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|
| T |
6351328 |
ggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgacggtgag |
6351229 |
T |
|
| Q |
436 |
agattattctcagctgttccaacgtccacgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggcta |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6351228 |
agattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtagtggacgttggaatatgggcta |
6351129 |
T |
|
| Q |
536 |
tgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctat |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6351128 |
tgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctat |
6351029 |
T |
|
| Q |
636 |
tactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgt |
735 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6351028 |
tactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgt |
6350929 |
T |
|
| Q |
736 |
aatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaag |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350928 |
aatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaag |
6350867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 236 - 797
Target Start/End: Complemental strand, 6336443 - 6335882
Alignment:
| Q |
236 |
tttcttgttattgaatggcaactcgtgtggtcccacaaaagataatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336443 |
tttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttc |
6336344 |
T |
|
| Q |
336 |
ggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacactaacaaccgtcttacctcgacctaaacgacggtgag |
435 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||| |
|
|
| T |
6336343 |
ggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgacggtgag |
6336244 |
T |
|
| Q |
436 |
agattattctcagctgttccaacgtccacgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggcta |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336243 |
agattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaatatgggcta |
6336144 |
T |
|
| Q |
536 |
tgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctat |
635 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336143 |
tgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctat |
6336044 |
T |
|
| Q |
636 |
tactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgt |
735 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336043 |
tactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgt |
6335944 |
T |
|
| Q |
736 |
aatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaag |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6335943 |
aatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaag |
6335882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 236 - 797
Target Start/End: Complemental strand, 6328885 - 6328324
Alignment:
| Q |
236 |
tttcttgttattgaatggcaactcgtgtggtcccacaaaagataatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttc |
335 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6328885 |
tttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctaccatccttc |
6328786 |
T |
|
| Q |
336 |
ggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacactaacaaccgtcttacctcgacctaaacgacggtgag |
435 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||| |
|
|
| T |
6328785 |
agccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgacggtgag |
6328686 |
T |
|
| Q |
436 |
agattattctcagctgttccaacgtccacgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggcta |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328685 |
agattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaatatgggcta |
6328586 |
T |
|
| Q |
536 |
tgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctat |
635 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328585 |
tgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctat |
6328486 |
T |
|
| Q |
636 |
tactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgt |
735 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328485 |
tactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatgatggttgtgatcgt |
6328386 |
T |
|
| Q |
736 |
aatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaag |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328385 |
aatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaag |
6328324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 6351654 - 6351530
Alignment:
| Q |
9 |
acatcatcatcacgcggtgttgtacttttcaatgcttgaccaaagcctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacacc |
108 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6351654 |
acatcatcatcatgcagtgttgtacttttcaatgcttgaccaaaccctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacacc |
6351555 |
T |
|
| Q |
109 |
aaaatcacgtgttcctttgaaagat |
133 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6351554 |
aaaatcacgtgttcctttgaaagat |
6351530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 6336665 - 6336545
Alignment:
| Q |
13 |
catcatcacgcggtgttgtacttttcaatgcttgaccaaagcctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacaccaaaa |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336665 |
catcatcatgcagtgttgtacttttcaatgcttgaccaaaccctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacaccaaaa |
6336566 |
T |
|
| Q |
113 |
tcacgtgttcctttgaaagat |
133 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6336565 |
tcacgtgttcctttgaaagat |
6336545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 854 - 957
Target Start/End: Complemental strand, 6335824 - 6335721
Alignment:
| Q |
854 |
aattgtttaagatctgtttagattaattaaagatttgtttgtttttgtttaaagaaaagaggttttggtcaaattaattttgtctaataatgtagcgtgg |
953 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
6335824 |
aattggttaagatctgtttagattaattaaagatttgtttgtttttatttaaagagaagaggttttggtcaaattaatttggtcgtataatgtagcgtgg |
6335725 |
T |
|
| Q |
954 |
aaat |
957 |
Q |
| |
|
|||| |
|
|
| T |
6335724 |
aaat |
6335721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 854 - 957
Target Start/End: Complemental strand, 6350809 - 6350705
Alignment:
| Q |
854 |
aattgtttaagatctgtttagattaattaaagatttgtttgtttttgtttaaagaaaagagg-ttttggtcaaattaattttgtctaataatgtagcgtg |
952 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
6350809 |
aattggttaagatctgtttagattaattaaagatttgtttgtttttatttaaagaaaagaggtttttggtcaaattaatttggtcgtataatgtagcgtg |
6350710 |
T |
|
| Q |
953 |
gaaat |
957 |
Q |
| |
|
||||| |
|
|
| T |
6350709 |
gaaat |
6350705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 854 - 947
Target Start/End: Complemental strand, 6328266 - 6328173
Alignment:
| Q |
854 |
aattgtttaagatctgtttagattaattaaagatttgtttgtttttgtttaaagaaaagaggttttggtcaaattaattttgtctaataatgta |
947 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
6328266 |
aattggttaagatctgtttagattaattaaagatttgtttgtttttatttaaagaaaagaggttttggtcaaattaatttggtcgtataatgta |
6328173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 6329098 - 6328966
Alignment:
| Q |
13 |
catcatcacgcggtgttgtacttttcaatgcttgaccaaagcctattaacttttcatgcctataaaaac------------aacctcgttacatagaaca |
100 |
Q |
| |
|
|||||||| || | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6329098 |
catcatcatgcagcgttgtacttttcattgcttgaccaaaccctattaacttttcatgcctataaaaacaaccacacccttaacctcgttacatagaaca |
6328999 |
T |
|
| Q |
101 |
acaacaccaaaatcacgtgttcctttgaaagat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6328998 |
acaacaccaaaatcacgtgttcctttgaaagat |
6328966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 610 - 796
Target Start/End: Original strand, 6488955 - 6489141
Alignment:
| Q |
610 |
catttttgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
709 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| ||||| | | |||||||| || |||||||| ||||| |||| ||| |||||||||| |
|
|
| T |
6488955 |
catttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgctggtttatggcgttgaagatg |
6489054 |
T |
|
| Q |
710 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
796 |
Q |
| |
|
| ||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
|
|
| T |
6489055 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
6489141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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