View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18440_low_10 (Length: 390)

Name: NF18440_low_10
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18440_low_10
NF18440_low_10
[»] chr1 (17 HSPs)
chr1 (29-269)||(1674364-1674604)
chr1 (191-270)||(11237705-11237784)
chr1 (32-112)||(40518969-40519049)
chr1 (32-112)||(30280266-30280346)
chr1 (43-115)||(52957493-52957565)
chr1 (195-270)||(23697528-23697603)
chr1 (32-117)||(36319720-36319805)
chr1 (206-270)||(31622889-31622953)
chr1 (32-117)||(11237830-11237916)
chr1 (195-267)||(2656149-2656219)
chr1 (32-117)||(13254509-13254594)
chr1 (32-115)||(4395798-4395881)
chr1 (54-117)||(19269961-19270024)
chr1 (32-71)||(23699198-23699237)
chr1 (335-369)||(1674263-1674297)
chr1 (33-74)||(10384085-10384126)
chr1 (230-270)||(786691-786731)
[»] chr6 (8 HSPs)
chr6 (191-270)||(7972369-7972448)
chr6 (29-110)||(14093522-14093603)
chr6 (194-270)||(21527031-21527107)
chr6 (32-117)||(9353342-9353424)
chr6 (32-117)||(2437580-2437665)
chr6 (32-101)||(23410740-23410809)
chr6 (37-117)||(8049436-8049516)
chr6 (32-117)||(25056753-25056838)
[»] chr4 (9 HSPs)
chr4 (193-270)||(24538014-24538091)
chr4 (193-270)||(38433952-38434029)
chr4 (195-270)||(37371135-37371210)
chr4 (32-117)||(49263246-49263331)
chr4 (33-117)||(54982502-54982586)
chr4 (35-117)||(38044582-38044664)
chr4 (195-267)||(45635034-45635104)
chr4 (239-269)||(19443154-19443184)
chr4 (241-270)||(49263547-49263576)
[»] scaffold0006 (2 HSPs)
scaffold0006 (191-270)||(46027-46106)
scaffold0006 (191-242)||(46337-46388)
[»] chr8 (14 HSPs)
chr8 (195-270)||(9455518-9455593)
chr8 (32-112)||(1256445-1256525)
chr8 (205-270)||(2742651-2742716)
chr8 (32-117)||(34146459-34146544)
chr8 (32-114)||(34039146-34039228)
chr8 (191-270)||(3443431-3443510)
chr8 (32-117)||(5871029-5871110)
chr8 (32-117)||(3741908-3741993)
chr8 (29-66)||(11087383-11087420)
chr8 (32-112)||(36682796-36682876)
chr8 (36-75)||(1358671-1358710)
chr8 (43-74)||(14896877-14896908)
chr8 (239-270)||(34146749-34146780)
chr8 (29-75)||(27231919-27231965)
[»] chr7 (13 HSPs)
chr7 (195-270)||(4962661-4962736)
chr7 (191-270)||(24393807-24393886)
chr7 (191-270)||(25290903-25290982)
chr7 (195-269)||(4678815-4678889)
chr7 (195-270)||(39434384-39434459)
chr7 (197-270)||(46671746-46671819)
chr7 (32-116)||(4567566-4567650)
chr7 (194-270)||(15643588-15643664)
chr7 (32-117)||(12394395-12394480)
chr7 (198-270)||(14771141-14771213)
chr7 (198-270)||(15221593-15221665)
chr7 (32-112)||(39427638-39427718)
chr7 (32-112)||(29664536-29664616)
[»] chr3 (15 HSPs)
chr3 (195-269)||(25841574-25841648)
chr3 (191-263)||(13779099-13779171)
chr3 (32-112)||(38750844-38750924)
chr3 (199-270)||(21959434-21959505)
chr3 (33-115)||(21934281-21934363)
chr3 (29-74)||(6749238-6749283)
chr3 (30-74)||(6472520-6472564)
chr3 (191-263)||(7259419-7259490)
chr3 (32-86)||(376000-376054)
chr3 (31-74)||(6512349-6512392)
chr3 (32-111)||(21915701-21915780)
chr3 (35-117)||(34668936-34669018)
chr3 (32-117)||(2599307-2599392)
chr3 (36-113)||(45759678-45759755)
chr3 (239-271)||(21916039-21916071)
[»] scaffold1130 (1 HSPs)
scaffold1130 (191-267)||(661-737)
[»] chr2 (19 HSPs)
chr2 (153-270)||(4959089-4959206)
chr2 (191-271)||(25965360-25965440)
chr2 (193-270)||(12412896-12412973)
chr2 (193-270)||(12424956-12425033)
chr2 (37-117)||(41541312-41541392)
chr2 (32-107)||(20171192-20171267)
chr2 (195-270)||(27746920-27746995)
chr2 (192-270)||(34424488-34424566)
chr2 (32-117)||(45273165-45273250)
chr2 (29-117)||(16806381-16806469)
chr2 (29-117)||(16845662-16845750)
chr2 (208-263)||(7485813-7485868)
chr2 (32-111)||(7486062-7486141)
chr2 (43-117)||(21252844-21252918)
chr2 (37-115)||(33024520-33024598)
chr2 (36-72)||(4316914-4316950)
chr2 (32-115)||(15507714-15507797)
chr2 (32-75)||(25714148-25714191)
chr2 (32-75)||(36243811-36243854)
[»] chr5 (16 HSPs)
chr5 (193-268)||(16365999-16366074)
chr5 (195-270)||(20202119-20202194)
chr5 (191-270)||(36059662-36059741)
chr5 (29-110)||(249279-249360)
chr5 (191-270)||(17558249-17558328)
chr5 (29-114)||(8544489-8544574)
chr5 (36-114)||(39585612-39585690)
chr5 (29-117)||(36437096-36437184)
chr5 (32-117)||(17201657-17201741)
chr5 (32-117)||(28620304-28620389)
chr5 (191-268)||(32717715-32717791)
chr5 (32-112)||(43346429-43346509)
chr5 (34-117)||(12436484-12436567)
chr5 (216-270)||(14655282-14655335)
chr5 (37-115)||(17200330-17200407)
chr5 (32-104)||(32474449-32474521)
[»] scaffold0005 (2 HSPs)
scaffold0005 (32-114)||(256995-257077)
scaffold0005 (205-270)||(271973-272038)
[»] scaffold0097 (1 HSPs)
scaffold0097 (191-270)||(48596-48674)
[»] scaffold0841 (1 HSPs)
scaffold0841 (32-75)||(4472-4515)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 1674604 - 1674364
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcatcaatagtattg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |     
T  1674604 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcgtcaatagtacta 1674505  T
Q  129 atggattttgatttaaaataaagtttgtttgttatgacataaagataaaacgtgcnnnnnnntaggaatttgttgaagaaagagagtagtaactaacaac 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||    
T  1674504 atggattttgatttaaaataaagtttgtttgttatgacataaagataaaacgcgcaaaaaaataggaatttgttgaagaaagagagtagtaactaacaac 1674405  T
Q  229 cgtttgttagatattaaatttattggaaagataaaatgtgt 269  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  1674404 cgtttgttagatattaaatttattgaaaagataaaatgtgt 1674364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 11237784 - 11237705
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| |||||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||    
T  11237784 taggaatttgttggagaaagagagtagtaactaacaattgttcgttacatattaaatttattggaaagataaaatgtgtg 11237705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 40519049 - 40518969
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| |||||  ||||||| | |||||| ||||||||||    
T  40519049 catgaatgttcaaaaggaagaaacagtggaagactcattggaaccgctgatggaaggtgaagagggagaagtagttgaaga 40518969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 30280266 - 30280346
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| |||||||||||| |||||||||||||||||||| | |||||  ||||||| | |||||| ||||||||||    
T  30280266 catgaatgttgaaaaggaagaaatagtggaagactcattggaactgctgatggaaggtgaagagggagaagtagttgaaga 30280346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 52957493 - 52957565
Alignment:
Q  43 aaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 115  Q
    |||| |||||||||||||||||||||||||||  |||||||  ||||||| ||| ||||||||||||||||||    
T  52957493 aaaaagaagaaagagtggaagactcattggaatggttgatgggaggtgaagatgaagaaatagttgaagactc 52957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 23697603 - 23697528
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| ||||| |||||| || |||||||  |||| ||| ||||||||||||||||||||||||| ||||||    
T  23697603 aatttgttggagaaatagagtaatagctaacaattgtttcttacatattaaatttattggaaagataaagtgtgtg 23697528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 36319805 - 36319720
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||||||||| |||||| ||| ||| |||| ||||||| | |||||| ||||||| |  |||||||||||||| ||||||    
T  36319805 catgaatgtttaaaagaaagaaaaagtagaatactcgttggaactgctgatgagaggtgaagagagagaaatagttgaaaactcat 36319720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 31622953 - 31622889
Alignment:
Q  206 gaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||| |||||||||||||||  ||| |||| ||||||||||||||| ||||||||| ||||||    
T  31622953 gaaagatagtagtaactaacaattgttggttacatattaaatttattgtaaagataaagtgtgtg 31622889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 11237916 - 11237830
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagact-cattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| ||||| |||||||||| ||| ||| ||||||||| | |||||  || |||| |||||||| |||||||||||||||    
T  11237916 catgaatgttcaaaagaaagaaagagtcgaaaacttcattggaactgctgatgggagctgaagatggagaagtagttgaagactcat 11237830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 2656149 - 2656219
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgt 267  Q
    ||||||||| | |||||||||||||||||||||  ||||||   |||||||||||||| ||||||| ||||||    
T  2656149 aatttgttggaaaaagagagtagtaactaacaattgtttgt--catattaaatttatttgaaagatcaaatgt 2656219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 13254594 - 13254509
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||  |||||||||||| ||| |||||||| ||||||  | |||||| ||||||| |  ||| |||||||||||||||||    
T  13254594 catgaatgtccaaaaggaagaaaaagtagaagactcgttggaattgctgatgagaggtgaagagtgagcaatagttgaagactcat 13254509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 4395881 - 4395798
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 115  Q
    |||||||||| |||| ||| |||||||| ||||||||||||||  | |||||  ||||||| |   ||||||||||||||||||    
T  4395881 catgaatgttcaaaacgaaaaaagagtgaaagactcattggaatggatgatgggaggtgaatagaaagaaatagttgaagactc 4395798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 19269961 - 19270024
Alignment:
Q  54 agagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    ||||||||||||||| | |||| | |||||  ||||||| | ||||||||||||||||||||||    
T  19269961 agagtggaagactcactagaactgctgatgggaggtgaagacggagaaatagttgaagactcat 19270024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 23699237 - 23699198
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattg 71  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  23699237 catgaatgttcaaaaggaagaaagagtggaagactaattg 23699198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 1674297 - 1674263
Alignment:
Q  335 cactttgttatttttatgttaaaattctaaaacga 369  Q
    ||||||||||||||| |||||||||||||||||||    
T  1674297 cactttgttatttttgtgttaaaattctaaaacga 1674263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 10384126 - 10384085
Alignment:
Q  33 atgaatgtttaaaaggaagaaagagtggaagactcattggaa 74  Q
    ||||||||| |||| ||||||||| |||||||||||||||||    
T  10384126 atgaatgttcaaaaagaagaaagaatggaagactcattggaa 10384085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 786731 - 786691
Alignment:
Q  230 gtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||||| |||||||||||||| |||||||||| ||||||    
T  786731 gtttgttacatattaaatttatttgaaagataaattgtgtg 786691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 7972448 - 7972369
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| ||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||    
T  7972448 taggaatttgttggagaaagagagtagtaaccaacaatggtttgttacatattaaatttattggaaagataaaatgtgtg 7972369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 14093603 - 14093522
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaa 110  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||| | |||||| ||||||| | |||||||||||||||    
T  14093603 cttcatgaatgtttaaaatgaagaaaaagtagaagactcattggaactgatgatgagaggtgaagagggagaaatagttgaa 14093522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 21527107 - 21527031
Alignment:
Q  194 gaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||||||| ||||| ||||||||||| |||||  |||||||| ||||||||||||||| ||||||||| ||||||    
T  21527107 gaatttgttggagaaaaagagtagtaaccaacaattgtttgttacatattaaatttattgaaaagataaagtgtgtg 21527031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 9353342 - 9353424
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||||||||||| |||||||||||| |||   | |||| ||||||| | ||||||||||||||||||||||    
T  9353342 catgaatgttcaaaaggaagaaagagtagaagactcattgaaac---tcatgagaggtgaagagggagaaatagttgaagactcat 9353424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 2437665 - 2437580
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||||||| ||||||||| || ||||||    |||||| ||||||| | ||||||||||||||||||||||    
T  2437665 catgaatgttcaaaaggaagaaaaagtggaagattcgttggaatttctgatgagaggtgaagaaggagaaatagttgaagactcat 2437580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 23410740 - 23410809
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaa 101  Q
    |||||||||| |||||||||||||||| |||||||||||||| | |||||||  ||||||| | ||||||    
T  23410740 catgaatgttcaaaaggaagaaagagtcgaagactcattggaccggttgatgggaggtgaagagggagaa 23410809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 8049436 - 8049516
Alignment:
Q  37 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    ||||| |||||| ||||| |||||||||||| ||||||  |||||||| ||||||| | |||  |||||||||| ||||||    
T  8049436 atgttcaaaagggagaaaaagtggaagactcgttggaattgttgatgagaggtgaagagggaacaatagttgaatactcat 8049516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 25056753 - 25056838
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| ||| | |||||| ||| |||||||| ||| ||  |||||||| ||||||| | | || |||||||||||||||||    
T  25056753 catgaatgttcaaaggaaagaaaaagttgaagactcgttgaaattgttgatgagaggtgaagaggaagcaatagttgaagactcat 25056838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 24538091 - 24538014
Alignment:
Q  193 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  24538091 ggaatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 24538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 38434029 - 38433952
Alignment:
Q  193 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||  ||||| |||||||||||| ||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  38434029 ggaatttgttagagaaatagagtagtaactcacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 38433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 37371210 - 37371135
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| | |||||||||||||||||||||  |||||||  ||||||||||||||| ||||||||| ||||||    
T  37371210 aatttgttggaaaaagagagtagtaactaacaattgtttgttgtatattaaatttattgaaaagataaagtgtgtg 37371135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 49263246 - 49263331
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| ||| |||| ||| |||||||||||| ||||||  | |||||| ||||||| | |||| |||||||||||||||||    
T  49263246 catgaatgttcaaatggaaaaaaaagtggaagactcgttggaattgctgatgagaggtgaagagggagcaatagttgaagactcat 49263331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 54982586 - 54982502
Alignment:
Q  33 atgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||||||||||||||| | |||||||||| |||||   | |||||| ||||||| | |||| ||||| |||||||||||    
T  54982586 atgaatgtttaaaaggaagaaaaaatggaagactcgttggatttgctgatgagaggtgaagagggagcaatagctgaagactcat 54982502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 38044664 - 38044582
Alignment:
Q  35 gaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    ||||||| |||| ||||||| |||||||||||| || |||  |  ||||| ||||||| |||||| |||||||||||||||||    
T  38044664 gaatgttcaaaatgaagaaaaagtggaagactcgttagaattgccgatgagaggtgaagatggagcaatagttgaagactcat 38044582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 45635104 - 45635034
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgt 267  Q
    ||||||||| | |||||||||||||||||||||  ||||||   |||||||||||||| ||||||| ||||||    
T  45635104 aatttgttggaaaaagagagtagtaactaacaattgtttgt--catattaaatttatttgaaagatcaaatgt 45635034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 269
Target Start/End: Complemental strand, 19443184 - 19443154
Alignment:
Q  239 atattaaatttattggaaagataaaatgtgt 269  Q
    |||||||||||||||||||||||||||||||    
T  19443184 atattaaatttattggaaagataaaatgtgt 19443154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 49263547 - 49263576
Alignment:
Q  241 attaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||||||||||||||||||||    
T  49263547 attaaatttattggaaagataaaatgtgtg 49263576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 46106 - 46027
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| |||||||||||||| ||||| ||  |||||||| ||||||||||||||||||||||||||||||||    
T  46106 taggaatttgttggagaaagagagtagtcactaaaaattgtttgttacatattaaatttattggaaagataaaatgtgtg 46027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 46388 - 46337
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatat 242  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||||| ||||    
T  46388 taggaatttgttggagaaagagagtagtaactaaaaattgtttgttacatat 46337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 9455518 - 9455593
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  9455518 aatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaaaataaaatgtgtg 9455593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 1256525 - 1256445
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||| | |||||||||||| ||||||||| |||||||||| |||||||| ||||||| | |||||||||||||||||    
T  1256525 catgaatgctcaaaaggaagaaaaagtggaagattcattggaacggttgatgagaggtgaagagggagaaatagttgaaga 1256445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 2742716 - 2742651
Alignment:
Q  205 agaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| || ||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  2742716 agaaagagactactaactaacaattgtttgttacatattaaatttattggaaagataaaatgtgtg 2742651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 34146459 - 34146544
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||||||| |||||||||| |||| |||| | |||||| |||||||   ||||||||||||||||||||||    
T  34146459 catgaatgttcaaaaggaagaaatagtggaagacccattagaactgctgatgagaggtgaagggggagaaatagttgaagactcat 34146544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 34039146 - 34039228
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 114  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||| | |||||  ||||||| ||||||||||| |||||||||    
T  34039146 catgaatgttcaaaagaaagaaaaagtagaagactcattggaacggctgatgggaggtgaagatggagaaatacttgaagact 34039228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 3443510 - 3443431
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||  ||||| |||||||||||| | ||  |||||||| ||||||||||||||||| ||||||| ||||||    
T  3443510 taggaatttgtttgagaaaaagagtagtaactcataattgtttgttacatattaaatttattggatagataaagtgtgtg 3443431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 5871029 - 5871110
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||||||| | |||||||||||||| |||   |||||| ||||||| | |||||||||||| |||||||||    
T  5871029 catgaatgttcaaaaggaagaaataatggaagactcattgaaac---tgatgagaggtgaaga-ggagaaatagttaaagactcat 5871110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 3741908 - 3741993
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| ||||||||||||||||||||||||| || |||  |||||||  |  |||| | || ||| |||||||||||||||    
T  3741908 catgaatgttcaaaaggaagaaagagtggaagactcgttagaattgttgatggaaaatgaagagggggaagtagttgaagactcat 3741993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 11087383 - 11087420
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagact 66  Q
    |||||||||||||||||||||||||| |||||||||||    
T  11087383 cttcatgaatgtttaaaaggaagaaaaagtggaagact 11087420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 36682796 - 36682876
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| |||||||| ||| |||||||||||||||||||| | | |||  ||||||| | |||||| |||| |||||    
T  36682796 catgaatgttcaaaaggaaaaaatagtggaagactcattggaactgctaatggaaggtgaagaaggagaagtagtcgaaga 36682876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 1358710 - 1358671
Alignment:
Q  36 aatgtttaaaaggaagaaagagtggaagactcattggaac 75  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  1358710 aatgttcaaaaggaagaaagagcggaagactcattggaac 1358671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 14896877 - 14896908
Alignment:
Q  43 aaaaggaagaaagagtggaagactcattggaa 74  Q
    ||||||||||||||||||||||||||||||||    
T  14896877 aaaaggaagaaagagtggaagactcattggaa 14896908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 34146749 - 34146780
Alignment:
Q  239 atattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||||||||||||||||||||||    
T  34146749 atattaaatttattggaaagataaaatgtgtg 34146780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 27231919 - 27231965
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaac 75  Q
    ||||||||||||| ||||| ||| || ||||||||||||||||||||    
T  27231919 cttcatgaatgttcaaaagaaagtaaaagtggaagactcattggaac 27231965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 4962736 - 4962661
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  4962736 aatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 4962661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 24393886 - 24393807
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| |||||||||||||||| ||| ||  |||||||| ||||||||||||||||||||||||| ||||||    
T  24393886 taggaatttgttggagaaagagagtagtaattaataattgtttgttacatattaaatttattggaaagataaagtgtgtg 24393807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 25290903 - 25290982
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| |||| || |||||||||||||||  |||||||| ||||||||||||||||||  ||||||||||||    
T  25290903 taggaatttgttggagaaggaaagtagtaactaacaattgtttgttacatattaaatttattggaatcataaaatgtgtg 25290982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 4678815 - 4678889
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgt 269  Q
    ||||||||| | |||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||| |||||    
T  4678815 aatttgttggataaagagagtagtaactaataattgtttgttacatattaaatttattggaaagataaagtgtgt 4678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 39434384 - 39434459
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| ||||||||||||| |||||| ||   ||||||| ||||||||||||||||||||||||| ||||||    
T  39434384 aatttgttggagaaagagagtagcaactaaaaattatttgttacatattaaatttattggaaagataaagtgtgtg 39434459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 46671819 - 46671746
Alignment:
Q  197 tttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||| ||||||||||| |||||||||||  |||||||| | ||||||||||||||||| ||||| ||||||    
T  46671819 tttgttgtagaaagagagttgtaactaacaattgtttgttacacattaaatttattggaaaaataaagtgtgtg 46671746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 4567566 - 4567650
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactca 116  Q
    |||||||||| ||||||||||||  ||||||||||| ||||||  | |||||| ||||||| | |||| ||||||||||||||||    
T  4567566 catgaatgttcaaaaggaagaaaatgtggaagactcgttggaattgctgatgagaggtgaagagggagcaatagttgaagactca 4567650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 15643588 - 15643664
Alignment:
Q  194 gaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||||||| ||||||||| | |||||||| ||   ||| ||| ||||||||||||||||||||||||||||||||    
T  15643588 gaatttgttggagaaagagattcgtaactaataattttttcttaaatattaaatttattggaaagataaaatgtgtg 15643664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 12394395 - 12394480
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||| ||||||||||||||||| || |   | |||||| || |||| | ||||||||||||||||||||||    
T  12394395 catgaatgttcaaaaggaaaaaagagtggaagactcaatgaagttgctgatgagagttgaagagggagaaatagttgaagactcat 12394480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 14771213 - 14771141
Alignment:
Q  198 ttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||| |||||||||||||||||||| ||   ||||||| ||||| ||||||||| ||||||||| ||||||    
T  14771213 ttgttggagaaagagagtagtaactaagaattttttgttacatatttaatttattgaaaagataaagtgtgtg 14771141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 15221665 - 15221593
Alignment:
Q  198 ttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||| |||||||||||||||||||| ||   ||||||| ||||| ||||||||| ||||||||| ||||||    
T  15221665 ttgttggagaaagagagtagtaactaagaattttttgttacatatttaatttattgaaaagataaagtgtgtg 15221593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 39427638 - 39427718
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| | |||||  ||||||| | |||||| ||||| ||||    
T  39427638 catgaatgttcaaaagaaagaaatagtggaagactcattggaactgctgatggaaggtgaagagggagaagtagttaaaga 39427718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 29664536 - 29664616
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| |||| ||| ||||||||||||||||||| |||| | |||||  ||||||| |  ||||| ||||||||||    
T  29664536 catgaatgttcaaaaagaaaaaagagtggaagactcattagaactgctgatggaaggtgaagagagagaagtagttgaaga 29664616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 25841648 - 25841574
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgt 269  Q
    ||||||||| |||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  25841648 aatttgttggagaaagagagtagtaactaacaattgtttgttatttattaaatttattggaaagataaaatgtgt 25841574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 13779099 - 13779171
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaa 263  Q
    ||||||||||||| |||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||    
T  13779099 taggaatttgttggagaaagagagtagtaactaacaattgtctgttacatattaaatttattggaaagataaa 13779171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 38750924 - 38750844
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| | |||||  ||||||| | |||||| ||||||||||    
T  38750924 catgaatgttcaaaaggaagaaagagtggaagactcattgaaactgctgatggaaggtgaagagggagaagtagttgaaga 38750844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 21959505 - 21959434
Alignment:
Q  199 tgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||||||||||||||||||||||||||  |||||||| |||||| ||||||| |||| ||||| ||||||    
T  21959505 tgttgaagaaagagagtagtaactaacaattgtttgttacatattatatttattagaaatataaagtgtgtg 21959434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 21934363 - 21934281
Alignment:
Q  33 atgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 115  Q
    ||||||||| |||| ||| ||| |||||||||||||||||||| |||||||  ||||||| | |||||| |||||||||||||    
T  21934363 atgaatgttcaaaaagaataaatagtggaagactcattggaactgttgatggaaggtgaagagggagaagtagttgaagactc 21934281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 6749238 - 6749283
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaa 74  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6749238 cttcatgaatgttcaaaaggaagaaagagtggaagactcattggaa 6749283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 6472564 - 6472520
Alignment:
Q  30 ttcatgaatgtttaaaaggaagaaagagtggaagactcattggaa 74  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  6472564 ttcatgaatgttcaaaaggaagaaagagtggaagactcattggaa 6472520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 7259490 - 7259419
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaa 263  Q
    ||||| ||||||| ||||||||| |||||||||||||  |||||||| ||||||| |||||||||||||||||    
T  7259490 taggagtttgttggagaaagaga-tagtaactaacaattgtttgttacatattaattttattggaaagataaa 7259419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 376000 - 376054
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgata 86  Q
    |||||||||| |||||||| |||||||| ||||||||||||||| | ||||||||    
T  376000 catgaatgttcaaaaggaataaagagtgaaagactcattggaacggctgatgata 376054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 6512392 - 6512349
Alignment:
Q  31 tcatgaatgtttaaaaggaagaaagagtggaagactcattggaa 74  Q
    |||||||| || ||||||||||||||||||||| ||||||||||    
T  6512392 tcatgaattttcaaaaggaagaaagagtggaaggctcattggaa 6512349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 21915701 - 21915780
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaag 111  Q
    |||||||||| |||||||| || ||||||||||||  ||||||| |||||||  ||||||||| | ||  ||||||||||    
T  21915701 catgaatgttcaaaaggaataacgagtggaagacttgttggaactgttgatggaaggtgaaaaggaagtcatagttgaag 21915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 34668936 - 34669018
Alignment:
Q  35 gaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    ||||||| |||| ||||||| |||||||||||| ||| ||  | ||||||  |||||| | |||| |||||||||||||||||    
T  34668936 gaatgttcaaaaagaagaaaaagtggaagactcgttgaaattgctgatgaagggtgaagagggagcaatagttgaagactcat 34669018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 2599307 - 2599392
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||||| | |||||||||||| ||||||    | |||| ||||||| |  ||| |||||||||||||||||    
T  2599307 catgaatgttcaaaaggaagagaaagtggaagactcgttggaattactaatgaaaggtgaagagagagcaatagttgaagactcat 2599392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 45759755 - 45759678
Alignment:
Q  36 aatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagac 113  Q
    |||||| |||| ||| |||||||||||||||||||| |||   | |||| ||||||| | |||||||||||| |||||    
T  45759755 aatgttcaaaaagaataaagagtggaagactcattgaaactactaatgagaggtgaagagggagaaatagttaaagac 45759678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 21916039 - 21916071
Alignment:
Q  239 atattaaatttattggaaagataaaatgtgtgt 271  Q
    ||||||||||||||||||||||||| |||||||    
T  21916039 atattaaatttattggaaagataaagtgtgtgt 21916071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 661 - 737
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgt 267  Q
    ||||||||||||| ||||||||||||||||| || ||  |||||||| |||||||||||||||||||||||||||||    
T  661 taggaatttgttggagaaagagagtagtaacaaaaaattgtttgttacatattaaatttattggaaagataaaatgt 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 4959206 - 4959089
Alignment:
Q  153 ttgtttgttatgacataaagataaaacgtgcnnnnnnntaggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttatt 252  Q
    ||||||||||||| | |||||||||||| ||       ||||||||||||| |||||||||||||||||||| ||   ||||||| |||||||||||| |    
T  4959206 ttgtttgttatgagagaaagataaaacgcgcaaaaaaataggaatttgttggagaaagagagtagtaactaataattatttgttacatattaaatttaat 4959107  T
Q  253 ggaaagataaaatgtgtg 270  Q
    ||||||||||| ||||||    
T  4959106 ggaaagataaagtgtgtg 4959089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 25965440 - 25965360
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtgt 271  Q
    ||||| ||| ||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| |||||||    
T  25965440 taggattttattggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtgt 25965360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 12412896 - 12412973
Alignment:
Q  193 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |  |||||||||||||||||||||||| ||||||    
T  12412896 ggaatttgttggagaaagagagtagtaactaacaattgtttgtcacgtattaaatttattggaaagataaagtgtgtg 12412973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 12424956 - 12425033
Alignment:
Q  193 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |  |||||||||||||||||||||||| ||||||    
T  12424956 ggaatttgttggagaaagagagtagtaactaacaattgtttgtcacgtattaaatttattggaaagataaagtgtgtg 12425033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 41541312 - 41541392
Alignment:
Q  37 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    ||||| ||||| ||||||||||| |||||||||||||||   |||||| ||||||||| ||||||||||||||||||||||    
T  41541312 atgttcaaaagaaagaaagagtgtaagactcattggaacgactgatgagaggtgaaaagggagaaatagttgaagactcat 41541392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 20171267 - 20171192
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagtt 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||   |||| | ||||||||| ||||||||||||    
T  20171267 catgaatgttcaaaaggaagaaagagtggaagactcattggaacgactgataagaggtgaaaagggagaaatagtt 20171192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 27746920 - 27746995
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||| ||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||| ||||||    
T  27746920 aatttattggagaaagagagtagtaactaacaattgtttgttaaatattaaatttattggaaaaataaagtgtgtg 27746995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 34424566 - 34424488
Alignment:
Q  192 aggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    |||||||||| |  |||| |||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  34424566 aggaatttgtcggggaaatagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 34424488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 45273250 - 45273165
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| |||||||||||| | |||||||||||||||||  |||||||| | || || |||||| |||||||||||||||||    
T  45273250 catgaatgttcaaaaggaagaaaaaatggaagactcattggaagtgttgatgagatgtaaagatggagcaatagttgaagactcat 45273165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 16806469 - 16806381
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||| |||||||| |||||||||||| |||||||||||| ||||||  |||||||| || |||| | |||| |||||||||||||||||    
T  16806469 cttcgtgaatgttcaaaaggaagaaaaagtggaagactcgttggaattgttgatgagagatgaagagggagcaatagttgaagactcat 16806381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 16845750 - 16845662
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||| |||||||| |||||||||||| |||||||||||| ||||||  |||||||| || |||| | |||| |||||||||||||||||    
T  16845750 cttcgtgaatgttcaaaaggaagaaaaagtggaagactcgttggaattgttgatgagagatgaagagggagcaatagttgaagactcat 16845662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 7485868 - 7485813
Alignment:
Q  208 aagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaa 263  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||    
T  7485868 aagagagtagtaactaacaattgtttgttacatactaaatttattgcaaagataaa 7485813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 7486141 - 7486062
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaag 111  Q
    |||||||||| ||| | |||||||||||||||||||||| |||| |||||||  ||||||| |  |||||| ||||||||    
T  7486141 catgaatgttcaaacgaaagaaagagtggaagactcattagaactgttgatgggaggtgaagagtgagaaagagttgaag 7486062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 21252844 - 21252918
Alignment:
Q  43 aaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    ||||| |||||| ||| |||||||| ||||||  | |||||| ||||||| |||||| |||||||||||||||||    
T  21252844 aaaagaaagaaaaagttgaagactcgttggaattgctgatgagaggtgaagatggagcaatagttgaagactcat 21252918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 33024520 - 33024598
Alignment:
Q  37 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 115  Q
    ||||| ||||||||||||||||||||| ||||||||||| | ||||   ||||||| |  || ||||||||||||||||    
T  33024520 atgttcaaaaggaagaaagagtggaaggctcattggaacggctgattggaggtgaagagagacaaatagttgaagactc 33024598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 4316914 - 4316950
Alignment:
Q  36 aatgtttaaaaggaagaaagagtggaagactcattgg 72  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4316914 aatgttcaaaaggaagaaagagtggaagactcattgg 4316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 15507714 - 15507797
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 115  Q
    |||||||||| |||||||||||||| || ||||||||||| ||| | |||||  |  |||| | ||||||||||||||| ||||    
T  15507714 catgaatgttcaaaaggaagaaagaatgcaagactcattgaaacggctgatggaaaatgaagagggagaaatagttgaaaactc 15507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 25714191 - 25714148
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaac 75  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||    
T  25714191 catgaatgttcaaaaggaagaaagagtggaagaatcattagaac 25714148  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 36243854 - 36243811
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaac 75  Q
    |||||||||| |||||||| |||||||||||||| |||||||||    
T  36243854 catgaatgttcaaaaggaataaagagtggaagacacattggaac 36243811  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 16365999 - 16366074
Alignment:
Q  193 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtg 268  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  16365999 ggaatttcttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtg 16366074  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 20202119 - 20202194
Alignment:
Q  195 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||| ||||||    
T  20202119 aatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattgaaaagataaagtgtgtg 20202194  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 36059741 - 36059662
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| |||||| ||||||||||||||||  |||| ||| ||||||||||||||||||||||||| ||||||    
T  36059741 taggaatttgttggagaaagtgagtagtaactaacaattgtttcttacatattaaatttattggaaagataaagtgtgtg 36059662  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 249360 - 249279
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | | |||  ||||||||| |||||| ||||||||    
T  249360 cttcatgaatgttcaaaaggaagaaagagtggaagactcattggaactgctcatggaaggtgaaaagggagaagtagttgaa 249279  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 17558249 - 17558328
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||| ||||| | ||||||||||| ||||| ||||||    
T  17558249 taggaatttgttggagaaagagagtagtaactaacaattgtttgttaaatatttagtttattggaaatataaagtgtgtg 17558328  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 8544574 - 8544489
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 114  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| ||| | |||||| ||||||| |  || |||||||||||||||    
T  8544574 cttcatgaatgttcaaaaggaagaaagagtggaagactcgttgaaactgctgatgagaggtgaagagagataaatagttgaagact 8544489  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 39585690 - 39585612
Alignment:
Q  36 aatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 114  Q
    |||||| |||||||||||| |||||||||||||||| ||| | |||||| ||||||| | |||| ||||||||||||||    
T  39585690 aatgttcaaaaggaagaaaaagtggaagactcattgaaactgctgatgaaaggtgaagagggagcaatagttgaagact 39585612  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 36437184 - 36437096
Alignment:
Q  29 cttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||| || |||||||||||| |||||||| ||| ||||||  | |||||| ||||||| ||| || |||||||||||||||||    
T  36437184 cttcatgaattttcaaaaggaagaaaaagtggaaggctcgttggaattgctgatgagaggtgaagatgaagcaatagttgaagactcat 36437096  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 17201657 - 17201741
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||||||| | |||||| |||||||||||| ||| ||  |||||||| ||||||| |  ||| |||||||||||||||||    
T  17201657 catgaatgtttaaa-gaaagaaaaagtggaagactcgttgaaattgttgatgagaggtgaagagagagcaatagttgaagactcat 17201741  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 28620304 - 28620389
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||||||||||| ||| || ||| ||| |||| ||||||| |||||||| ||||||| |  |||||||| ||||| ||||||    
T  28620304 catgaatgtttaaaagaaagtaaaagtagaatactcgttggaactgttgatgagaggtgaagagagagaaataattgaaaactcat 28620389  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 32717791 - 32717715
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtg 268  Q
    |||||||||||||| ||||||||||||||||||||||  ||| |||| |||| ||||||||  |||| ||||| ||||    
T  32717791 taggaatttgttga-gaaagagagtagtaactaacaattgttagttacatatcaaatttatcagaaaaataaagtgtg 32717715  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 43346509 - 43346429
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 112  Q
    |||||||||| |||| ||| ||||||||||||||||||| |||| | |||||  ||||||| |  ||||| ||||||||||    
T  43346509 catgaatgttcaaaaagaaaaaagagtggaagactcattagaactgctgatggaaggtgaagagagagaagtagttgaaga 43346429  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 12436567 - 12436484
Alignment:
Q  34 tgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 117  Q
    |||||||| |||||||| ||| ||||||| |||| || |||  |||||||| ||||||| | |||| ||| |||||||||||||    
T  12436567 tgaatgttcaaaaggaataaaaagtggaacactcgttagaattgttgatgagaggtgaagagggagcaatggttgaagactcat 12436484  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 14655282 - 14655335
Alignment:
Q  216 agtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||| ||||||    
T  14655282 agtaactaacaattgtttgttacatattaaa-ttattggaaagataaagtgtgtg 14655335  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 17200330 - 17200407
Alignment:
Q  37 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 115  Q
    ||||| |||||||||||| ||||||||| | ||||||||   |||||  ||||||| | ||||||||||||||||||||    
T  17200330 atgttcaaaaggaagaaatagtggaagattaattggaacgactgatg-gaggtgaagaaggagaaatagttgaagactc 17200407  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 32474449 - 32474521
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaata 104  Q
    |||||||||| |||||||||||| |||| ||||||| || |||| || ||||| || |||| | |||||||||    
T  32474449 catgaatgttcaaaaggaagaaaaagtgaaagactcgttagaactgtggatgagagatgaagagggagaaata 32474521  T

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Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 256995 - 257077
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 114  Q
    |||||||||| |||| ||||||| |||||||||||  ||||||  |||||||| ||||||| | |||| ||||||||||||||    
T  256995 catgaatgttcaaaaagaagaaacagtggaagacttgttggaattgttgatgagaggtgaagagggagcaatagttgaagact 257077  T

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Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 272038 - 271973
Alignment:
Q  205 agaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||| |||||||||||||| ||  |||||||| ||||||||||||||| ||||||||| ||||||    
T  272038 agaaaaagagtagtaactaataattgtttgttacatattaaatttattgaaaagataaagtgtgtg 271973  T

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Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 48674 - 48596
Alignment:
Q  191 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 270  Q
    ||||||||||||||| ||| |||||||||||||| ||  |||||||| ||||||||||||||| ||| ||| | ||||||    
T  48674 taggaatttgttgaaaaaa-agagtagtaactaaaaattgtttgttacatattaaatttattgaaaaaatatagtgtgtg 48596  T

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Target: scaffold0841 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 4515 - 4472
Alignment:
Q  32 catgaatgtttaaaaggaagaaagagtggaagactcattggaac 75  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||    
T  4515 catgaatgttcaaaaggaagaaagagtggaagaatcattagaac 4472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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