View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_low_13 (Length: 346)
Name: NF18440_low_13
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 116 - 335
Target Start/End: Original strand, 1674937 - 1675156
Alignment:
| Q |
116 |
agggagtatgaaattagtttgaaatgttaattgggaataataagactaaagtatcattaataaattggtttgataaatcggtttaagggacatgagactt |
215 |
Q |
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| T |
1674937 |
agggagtatgaaattagtttgaaatgttaattggtaataagaagactaaagtatcattaataaatcggtttaataaatcggtttaagggacatgagactt |
1675036 |
T |
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| Q |
216 |
agactccttaaacaagtagtcatatctccgatcaatcctttaagcgtgtgnnnnnnnnttgattgggaaaggagaatccatcatgattcccaatagtata |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1675037 |
agactccttaaacaagtagtcatatctccggtcaatcccttaagcgtgtgaaaaaaaattgattgggaaaggagaatccatcatgattcccaatagtata |
1675136 |
T |
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| Q |
316 |
gtcatatgatatggagtata |
335 |
Q |
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| T |
1675137 |
gtcatatgatatggagtata |
1675156 |
T |
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