View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_low_14 (Length: 319)
Name: NF18440_low_14
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_14 |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 121 - 286
Target Start/End: Original strand, 38738792 - 38738951
Alignment:
| Q |
121 |
ccaatgaaaaatgctaaatggtgcgaaaggatattcgcacaaaacacacgaatggatgtaaaacctttgaattgttacgtgtgtttttgtcaaatttaat |
220 |
Q |
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| T |
38738792 |
ccaatcaaaaatgctaaatggtgcgaaaggatattcgcacaaaacacacgaatggatgtaaaacctttgaattgttacgtgtgtttttgtcaaatttaat |
38738891 |
T |
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| Q |
221 |
ctcaattgaagacatgccttttaagtttaactacacctctaatataattttatattgatgtagcat |
286 |
Q |
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| T |
38738892 |
ctcaattgaagacatgcct------tttaactacacctctaatataattttatattgatgtagcat |
38738951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 38151338 - 38151491
Alignment:
| Q |
127 |
aaaaatgctaaatggtgcgaaaggatattcgcacaaaacacacgaatggatgtaaaacctttgaattgttacgtgtgtttttgtcaaatttaatctcaat |
226 |
Q |
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| T |
38151338 |
aaaaatgctaaatggtgcgaaaggatattcgcacaaaacacacgaatggatgtaaaacctttgaattgctacgtgtgtttttgtcaaatttaatctcaat |
38151437 |
T |
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| Q |
227 |
tgaagacatgccttttaagtttaactacacctctaatataattttatattgatgtagcat |
286 |
Q |
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| T |
38151438 |
tgaagacatgcct------tttaactacacctctaatataattttatattgatgtagcat |
38151491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 38738640 - 38738739
Alignment:
| Q |
15 |
atttatactatatagtgtttttctattaataatatataatactnnnnnnnnnnnnctatattaaagtggttcatattgatgccaatggttgagtatttta |
114 |
Q |
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| T |
38738640 |
atttatactatatagtgtttttctattaataatatataatactaaaaaaaaa---ctatattaaagtggttcatattgatgccaatggttgagtatttta |
38738736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 8272 - 8423
Alignment:
| Q |
127 |
aaaaatgctaaatggtgcgaaaggatattcgcacaaaacacacgaatggatgtaaaacctttgaattgttacgtgtgtttttgtcaaatttaatctcaat |
226 |
Q |
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| T |
8272 |
aaaaatgctaaacggtgcgaaaggattttcgcacaaaacacacgaatggatgtaaaacctttgaattgctac--gtgtttttgtcaaatttaatctcaat |
8369 |
T |
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| Q |
227 |
tgaagacatgccttttaagtttaactacacctctaatataattttatattgatgtagcat |
286 |
Q |
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| T |
8370 |
tgaaaacatgcct------tttaactacacctctaatataattttatattgatgtagcat |
8423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 29059122 - 29059273
Alignment:
| Q |
127 |
aaaaatgctaaatggtgcgaaaggatattcgcacaaaacacacgaatggatgtaaaacctttgaattgttacgtgtgtttttgtcaaatttaatctcaat |
226 |
Q |
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|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
29059122 |
aaaaatgctaaacggtgcgaaaggattttcttacaaaacacacgaatggatgtaaaacctttgaattgctac--gtgtttttgtcaaatttaatctcaat |
29059219 |
T |
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| Q |
227 |
tgaagacatgccttttaagtttaactacacctctaatataattttatattgatgtagcat |
286 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059220 |
tgaaaacatgcct------tttaactacacctctaatataattttatattgatgtagcat |
29059273 |
T |
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