View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_low_16 (Length: 287)
Name: NF18440_low_16
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 35591614 - 35591352
Alignment:
| Q |
15 |
atcagttatgctatcttcaagagtggttgaaaaaatatactattacctagttctgttaaataacaatatcaaattcaatcactgacatttttcaatatat |
114 |
Q |
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| T |
35591614 |
atcagttatgctatcttaaagagtggttgaaaaaatatactattacctagttctgttaaataacaatatcaaattcaatcactgacatttttcaatatat |
35591515 |
T |
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| Q |
115 |
cacnnnnnnnnnnnnnnnnnctgattaccttattaggtaaattgcagtgaaatttctgattaaaatattaattgatgatatatttactaaaatgcttggt |
214 |
Q |
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| T |
35591514 |
cactttttttttttttttt-ctgattaccttattaggtaaattgcagtgaaatttctgattaaaatattaattgatgatatatttactaaaatgcttggt |
35591416 |
T |
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| Q |
215 |
atttatatgcacagtagttgctaggttggatttatcattgtatttatgctcaatttattcatct |
278 |
Q |
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| T |
35591415 |
atttatatgcacagtagttgctaggttggatttatcattgtatttatgctcaatttattcatct |
35591352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 35579380 - 35579316
Alignment:
| Q |
214 |
tatttatatgcacagtagttgctaggttggatttatcattgtatttatgctcaatttattcatct |
278 |
Q |
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| T |
35579380 |
tatttatatgcacagtagttgctaggttggatttatcattgtatttatgcacaaattattcatct |
35579316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 35579477 - 35579415
Alignment:
| Q |
55 |
tattacctagttctgttaaataacaatatcaaattcaatcactgacatttttcaatatatcac |
117 |
Q |
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| T |
35579477 |
tattagctagtactattacataacaatatcaaattcaatcactgccttttttcaatatatcac |
35579415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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