View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_low_18 (Length: 253)
Name: NF18440_low_18
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 36770053 - 36769831
Alignment:
| Q |
8 |
gaatcttcttctttgtttcaaatattgctttcagtcaatttctttgcatcaagtcactataacacctctttcaacaaaacnnnnnnnnnnntcactataa |
107 |
Q |
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| T |
36770053 |
gaatcttcttctttgtttcaaatattgctttcagtcaatttctttgcatcaagtcactataacacctctttcaacaaaa---aaaaaaaaatcactataa |
36769957 |
T |
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| Q |
108 |
tataatgccaaactattatattgtgactttttaatgctaaaatacatcttcnnnnnnnacaattcaatattttcaaaggatataattaaaccgatgtaca |
207 |
Q |
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| T |
36769956 |
tataatgccaaactattatattgtgactttttaatgctaaaatacatcttctttttttacaattcaatattttcaaaggata----taaaccgatgtaca |
36769861 |
T |
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| Q |
208 |
agaacaaataaatttttgcaaacctagcct |
237 |
Q |
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| T |
36769860 |
agaacgaataaatttctgcaaacctagcct |
36769831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 36765966 - 36765831
Alignment:
| Q |
99 |
tcactataatataatgccaaactattatattgtgactttttaatgctaaaatacatcttcnnnnnnnacaattcaatattttcaaaggatataattaaac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
36765966 |
tcactataatataatgccaaactattatattgtgactttttaatgctaaaatacatcttcttcttttacaattcaatattttcaaaggata----taaac |
36765871 |
T |
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| Q |
199 |
cgatgtacaagaacaaataaatttttgcaaacctagcctt |
238 |
Q |
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| T |
36765870 |
cgatgtacaagaacgaataaatttctgcaaacctagcctt |
36765831 |
T |
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