View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18440_low_21 (Length: 244)

Name: NF18440_low_21
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18440_low_21
NF18440_low_21
[»] chr3 (8 HSPs)
chr3 (1-227)||(3745236-3745462)
chr3 (1-57)||(4142865-4142921)
chr3 (1-57)||(4158675-4158731)
chr3 (1-51)||(3753852-3753902)
chr3 (5-57)||(803952-804004)
chr3 (7-45)||(988687-988725)
chr3 (8-57)||(12132329-12132378)
chr3 (5-45)||(1931894-1931934)
[»] chr8 (2 HSPs)
chr8 (2-47)||(31145143-31145188)
chr8 (1-45)||(19727185-19727229)
[»] chr5 (3 HSPs)
chr5 (1-51)||(11081447-11081497)
chr5 (1-45)||(23764997-23765041)
chr5 (1-45)||(23814845-23814889)
[»] chr4 (1 HSPs)
chr4 (8-45)||(22672879-22672916)
[»] chr1 (1 HSPs)
chr1 (8-51)||(25611733-25611779)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3745236 - 3745462
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagcagttacatgtgtctactgctcgaaacatcca---cttactctac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||    
T  3745236 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagcagttaaatgtgtctactgctcgaaacatccacttcttactctac 3745335  T
Q  98 gaccacacccgttacttaggcaagtacattctcttatctgaaccaatggactctattttcacaaacataacatcatctaactccacacggtttgagtatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||    
T  3745336 gaccacacccgttacttaggcaagtacattctcttatctgaaccaatcgactctattttcacaaacataa---catctaactccacacggtttgaatatt 3745432  T
Q  198 ctcctaacggtttcaatggagattatcctc 227  Q
    ||||||||||||||||||||||||||||||    
T  3745433 ctcctaacggtttcaatggagattatcctc 3745462  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4142921 - 4142865
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagca 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  4142921 atgtgtttgcaagtcatggaattctctaatatctgatcccaaattcgtcaagaagca 4142865  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4158731 - 4158675
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagca 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  4158731 atgtgtttgcaagtcatggaattctctaatatctgatcccaaattcgtcaagaagca 4158675  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3753852 - 3753902
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaa 51  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||| |||||    
T  3753852 atgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaa 3753902  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 804004 - 803952
Alignment:
Q  5 gtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagca 57  Q
    ||||||||||||||||||||||||||||  ||| |||| |||| |||||||||    
T  804004 gtttgcaagtcatggaattctctaatatgcgatgccaactttgccaaaaagca 803952  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 988687 - 988725
Alignment:
Q  7 ttgcaagtcatggaattctctaatatctgatcccaaatt 45  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  988687 ttgcaagtcatggaattctttaatctctgatcccaaatt 988725  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 12132329 - 12132378
Alignment:
Q  8 tgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagca 57  Q
    ||||| || ||||||||||| ||||||||||||||||||| ||| |||||    
T  12132329 tgcaaatcctggaattctctcatatctgatcccaaatttgccaagaagca 12132378  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 1931934 - 1931894
Alignment:
Q  5 gtttgcaagtcatggaattctctaatatctgatcccaaatt 45  Q
    ||||||||||||| |||||||||||| ||||| ||||||||    
T  1931934 gtttgcaagtcatagaattctctaatctctgaccccaaatt 1931894  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 31145188 - 31145143
Alignment:
Q  2 tgtgtttgcaagtcatggaattctctaatatctgatcccaaatttg 47  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  31145188 tgtgtttgcaagtcatggaattctcttatatctgatcccaaatttg 31145143  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19727185 - 19727229
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatt 45  Q
    ||||||||||||||| | |||||||||||| ||||||| ||||||    
T  19727185 atgtgtttgcaagtcgttgaattctctaatctctgatcacaaatt 19727229  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11081447 - 11081497
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaa 51  Q
    ||||||||||||||| || |||||| ||||||||||||||||||| |||||    
T  11081447 atgtgtttgcaagtcgtgaaattctttaatatctgatcccaaattcgtcaa 11081497  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23765041 - 23764997
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatt 45  Q
    |||||| |||||||  |||||||||||||| ||||||||||||||    
T  23765041 atgtgtgtgcaagtggtggaattctctaatttctgatcccaaatt 23764997  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23814889 - 23814845
Alignment:
Q  1 atgtgtttgcaagtcatggaattctctaatatctgatcccaaatt 45  Q
    |||||| |||||||  |||||||||||||| ||||||||||||||    
T  23814889 atgtgtgtgcaagtggtggaattctctaatttctgatcccaaatt 23814845  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 22672916 - 22672879
Alignment:
Q  8 tgcaagtcatggaattctctaatatctgatcccaaatt 45  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  22672916 tgcaagtcatggaattctctaatctctgatcgcaaatt 22672879  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 25611779 - 25611733
Alignment:
Q  8 tgcaagtcatggaattctctaatatc---tgatcccaaatttgtcaa 51  Q
    ||||||||||||||||||||||||||   ||||||||| ||||||||    
T  25611779 tgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaa 25611733  T

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