View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18440_low_24 (Length: 240)

Name: NF18440_low_24
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18440_low_24
NF18440_low_24
[»] chr4 (2 HSPs)
chr4 (19-240)||(22085485-22085706)
chr4 (81-201)||(30518166-30518286)
[»] chr2 (3 HSPs)
chr2 (23-221)||(40040719-40040917)
chr2 (35-204)||(38895872-38896041)
chr2 (83-159)||(42898288-42898364)
[»] chr7 (2 HSPs)
chr7 (62-219)||(40749359-40749516)
chr7 (86-201)||(44150818-44150933)
[»] chr8 (2 HSPs)
chr8 (19-201)||(5788741-5788923)
chr8 (19-218)||(33186661-33186860)
[»] chr1 (8 HSPs)
chr1 (82-204)||(12804526-12804648)
chr1 (79-221)||(28496104-28496246)
chr1 (81-220)||(36989328-36989467)
chr1 (62-219)||(12774906-12775063)
chr1 (50-221)||(31644056-31644227)
chr1 (92-204)||(42287116-42287228)
chr1 (92-201)||(4160376-4160485)
chr1 (86-219)||(50788819-50788952)
[»] chr3 (1 HSPs)
chr3 (81-205)||(52248369-52248493)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 22085706 - 22085485
Alignment:
Q  19 ttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085706 ttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaag 22085607  T
Q  119 tgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085606 tgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggt 22085507  T
Q  219 atatactatatatttactatct 240  Q
    ||||||||||||||||||||||    
T  22085506 atatactatatatttactatct 22085485  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 30518286 - 30518166
Alignment:
Q  81 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 180  Q
    ||||||| |||||||| ||||||||||||||||| ||||| || ||    ||||| ||||| || ||||||||||||||    || |  ||||| |||||    
T  30518286 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 30518187  T
Q  181 agagtacaaatgtgattgtgg 201  Q
    ||| ||||||||||| |||||    
T  30518186 agaatacaaatgtgactgtgg 30518166  T

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Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 40040719 - 40040917
Alignment:
Q  23 gtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgtt 122  Q
    ||||||||||| |||  ||||||| | |||||  ||||||| ||||| || || | ||||||||| || ||||||||||||||||||||||| |||||||    
T  40040719 gtgcaccatgaccctagtagagctctaggagacctgacagggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtgtt 40040818  T
Q  123 ccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtata 221  Q
    | ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||| |||||||||||||||| | |||||||||||||    
T  40040819 ctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagatgtgattgtggcacactattctccaggtata 40040917  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 38896041 - 38895872
Alignment:
Q  35 ccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatg 134  Q
    ||||| || |||||||||||||| || || |||||||| || | | |||| ||||| ||||||||||||||||||||||| ||||| || ||    ||||    
T  38896041 ccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatg 38895942  T
Q  135 cagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcac 204  Q
    | |||||||| ||||||||||| ||    |||| |||||| |||||||| ||||||||||||||||||||    
T  38895941 ctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcac 38895872  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 42898288 - 42898364
Alignment:
Q  83 agaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctca 159  Q
    ||||| || ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || |||||||||||    
T  42898288 agaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctca 42898364  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 40749359 - 40749516
Alignment:
Q  62 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 161  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |    
T  40749359 ggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcaca 40749458  T
Q  162 gcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta 219  Q
      || | |||||| |||||||| || || ||||||||||| ||| | ||||| |||||    
T  40749459 ctaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggta 40749516  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 44150933 - 44150818
Alignment:
Q  86 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagt 185  Q
    ||||||||||||||||| ||||| ||||| ||||| || || | |||||| |||||||| |||||||| |||||    || | |||||| ||||| || |    
T  44150933 aaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaat 44150834  T
Q  186 acaaatgtgattgtgg 201  Q
    ||||||||||||||||    
T  44150833 acaaatgtgattgtgg 44150818  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 5788923 - 5788741
Alignment:
Q  19 ttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaag 118  Q
    ||||||||| ||||| || || ||||| || || |||||||| ||||| |||||||| | |   ||||| |||||||||||||||||||| |||||||||    
T  5788923 ttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagtggaaatgtgaaaag 5788824  T
Q  119 tgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtgg 201  Q
    ||||| ||||||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||| || | |||||| |||||    
T  5788823 tgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtgg 5788741  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 33186661 - 33186860
Alignment:
Q  19 ttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaag 118  Q
    |||||| || ||||| |||||||||||||| || ||||| || || ||||| || || | | ||||||||||||||||||| |||||||| ||||| ||     
T  33186661 ttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaa 33186760  T
Q  119 tgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggt 218  Q
    ||||| ||||||||||| |||||||||||||||||||||||    ||  |||||||  |||||||||| |||||||||||||| ||  |||| |||||||    
T  33186761 tgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtggaaccgttttttccaggt 33186860  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 12804648 - 12804526
Alignment:
Q  82 tagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactaga 181  Q
    |||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||   |||| |||||| |||||     
T  12804648 tagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagg 12804549  T
Q  182 gagtacaaatgtgattgtggcac 204  Q
    ||||| | |||||| ||||||||    
T  12804548 gagtatagatgtgactgtggcac 12804526  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 28496246 - 28496104
Alignment:
Q  79 tagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaact 178  Q
    ||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||  || |  ||||| ||     
T  28496246 tagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtaca 28496147  T
Q  179 agagagtacaaatgtgattgtggcacaattttctccaggtata 221  Q
    ||||| ||||||||||| ||||||||  | ||||| |||||||    
T  28496146 agagaatacaaatgtgactgtggcaccctcttctcaaggtata 28496104  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 36989328 - 36989467
Alignment:
Q  81 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 180  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||  ||| || ||||| || ||    
T  36989328 gtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaag 36989427  T
Q  181 agagtacaaatgtgattgtggcacaattttctccaggtat 220  Q
     || ||||||||||| ||||| || || || |||||||||    
T  36989428 ggaatacaaatgtgactgtggaaccatcttttccaggtat 36989467  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 12774906 - 12775063
Alignment:
Q  62 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 161  Q
    ||||| |||||||| |||  |||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||     
T  12774906 ggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcatt 12775005  T
Q  162 gcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta 219  Q
      || | |||||| ||||  ||||| | |||||| ||||||||  | |||||||||||    
T  12775006 ctaaaacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 12775063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 31644227 - 31644056
Alignment:
Q  50 ggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgatt 149  Q
    |||||| | |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||||  ||||| ||||| |||||||    
T  31644227 ggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgatt 31644128  T
Q  150 ggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtata 221  Q
    ||||||||||    || |  ||||| ||| |||| || |||||||||||||| ||  |||| ||||||||||    
T  31644127 ggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtggtacccttttttccaggtata 31644056  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 42287116 - 42287228
Alignment:
Q  92 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaat 191  Q
    ||||||||||||||||| |||||||| || || ||||||||||| ||||||||||| |||||||| |||   |||| |||||| |||||||| || | ||    
T  42287116 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagat 42287215  T
Q  192 gtgattgtggcac 204  Q
    |||||||||||||    
T  42287216 gtgattgtggcac 42287228  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 4160376 - 4160485
Alignment:
Q  92 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaat 191  Q
    ||||||||||||||||||||||| || ||||| ||   |||||||||||| || |||||||||||||||  ||| |||||||| |||| |||||| || |    
T  4160376 ggtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagt 4160475  T
Q  192 gtgattgtgg 201  Q
    |||| |||||    
T  4160476 gtgactgtgg 4160485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 50788952 - 50788819
Alignment:
Q  86 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagt 185  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||| || |||   |||| |||||| || ||||| |    
T  50788952 aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaat 50788853  T
Q  186 acaaatgtgattgtggcacaattttctccaggta 219  Q
    | |  ||||| ||||||||  | |||||||||||    
T  50788852 ataggtgtgactgtggcactctcttctccaggta 50788819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 52248493 - 52248369
Alignment:
Q  81 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 180  Q
    ||||||| |||||||||||||| ||||| ||||||   ||||| || ||||| || |   ||| ||||| ||||| |||||  ||||  |||||||||||    
T  52248493 gtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaatacgctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactag 52248394  T
Q  181 agagtacaaatgtgattgtggcaca 205  Q
    |||||| ||||||||||||||||||    
T  52248393 agagtataaatgtgattgtggcaca 52248369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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