View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18440_low_26 (Length: 229)

Name: NF18440_low_26
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18440_low_26
NF18440_low_26
[»] chr4 (1 HSPs)
chr4 (1-212)||(38301492-38301702)
[»] chr5 (4 HSPs)
chr5 (2-109)||(19275310-19275417)
chr5 (4-109)||(39835139-39835244)
chr5 (1-86)||(12557645-12557730)
chr5 (49-90)||(31614645-31614686)
[»] chr2 (1 HSPs)
chr2 (1-86)||(12869143-12869228)
[»] chr1 (1 HSPs)
chr1 (1-95)||(38850201-38850295)
[»] chr3 (1 HSPs)
chr3 (49-115)||(43387090-43387156)
[»] chr7 (1 HSPs)
chr7 (13-95)||(44974361-44974443)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 38301492 - 38301702
Alignment:
Q  1 gaaccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgttaagaatagtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38301492 gaaccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgttaagaatagtccat 38301591  T
Q  101 accctaggtaaattataaacagttgcattcaatggaagatccattaccactattaaaacaaagtcaataattttacataaaactaaatatcatatactaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38301592 accctaggt-aattataaacagttgcattcaatggaagatccattaccactattaaaacaaagtcaataattttacataaaactaaatatcatatactaa 38301690  T
Q  201 ctcacctatact 212  Q
    ||||||||||||    
T  38301691 ctcacctatact 38301702  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 19275310 - 19275417
Alignment:
Q  2 aaccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgttaagaatagtccata 101  Q
    ||||||||||||| || ||||| ||||||||||||||||| || |||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||     
T  19275310 aaccaaggtttgcatttatgaccaagagtgaagttgatcatcttgaagatgggtacagatggaggaagtatggtcagaaggcagttaaaaatagtccatt 19275409  T
Q  102 ccctaggt 109  Q
    ||||||||    
T  19275410 ccctaggt 19275417  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 39835244 - 39835139
Alignment:
Q  4 ccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgttaagaatagtccatacc 103  Q
    ||||||||||| ||| |||| || |||||  ||||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||    
T  39835244 ccaaggtttgcattcttgactaaaagtgagattgatcaccttgaagatggatatagatggagaaaatatggacagaaagcagtcaagaatagtccgtacc 39835145  T
Q  104 ctaggt 109  Q
    | ||||    
T  39835144 caaggt 39835139  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12557645 - 12557730
Alignment:
Q  1 gaaccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgt 86  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||| ||||| || || ||| | |||||||| || ||||||||    
T  12557645 gaacccagatttgctttcatgacaaagagtgaagttgatcacctagatgatggttataggtggcgtaaatatggccaaaaagctgt 12557730  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 31614686 - 31614645
Alignment:
Q  49 gatggatacagatggagaaaatatggacagaaagctgttaag 90  Q
    ||||| ||||||||||| |||||||||||||||| |||||||    
T  31614686 gatggttacagatggaggaaatatggacagaaagttgttaag 31614645  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12869228 - 12869143
Alignment:
Q  1 gaaccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgt 86  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || || ||| | |||||||| || ||||||||    
T  12869228 gaacccaggtttgctttcatgacaaagagtgaagttgatcacctagatgatggctataggtggcgtaaatatggccaaaaagctgt 12869143  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38850295 - 38850201
Alignment:
Q  1 gaaccaaggtttgctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgttaagaatag 95  Q
    |||||||| |||||||||||||| || || || |||||||| || |||||||||||| |||||||||| || || || |||||||| || |||||    
T  38850295 gaaccaagatttgctttcatgacgaaaagcgaggttgatcatctggaagatggataccgatggagaaagtacggtcaaaaagctgtcaaaaatag 38850201  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 43387156 - 43387090
Alignment:
Q  49 gatggatacagatggagaaaatatggacagaaagctgttaagaatagtccataccctaggtaaatta 115  Q
    |||||||||| |||||| || |||||| ||||  |||| ||||||||||||||||| ||||||||||    
T  43387156 gatggatacaaatggaggaagtatggaaagaagtctgtcaagaatagtccatacccaaggtaaatta 43387090  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 44974361 - 44974443
Alignment:
Q  13 gctttcatgacaaagagtgaagttgatcagctagaagatggatacagatggagaaaatatggacagaaagctgttaagaatag 95  Q
    ||||||||||| || || || || ||||| || |||||||| |||||||||||||| || || || ||||||||||| |||||    
T  44974361 gctttcatgacgaaaagcgaggtggatcatctggaagatgggtacagatggagaaagtacggtcaaaaagctgttaaaaatag 44974443  T

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