View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18440_low_4 (Length: 586)
Name: NF18440_low_4
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_4 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 586
Target Start/End: Complemental strand, 4632316 - 4631745
Alignment:
| Q |
20 |
ctatcgcatttgctaataacaaatttttgcgagaattgaccatcannnnnnnatagaaagaa----ttgttcatctttaatggagtctcttatttcaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
4632316 |
ctatcgcatttgctaataacaaatctttgcgagaattgactatcatttctttatagaaagaaagaattgttcatctttaatggagtctctcatttcaatt |
4632217 |
T |
|
| Q |
116 |
acatttttgtcatccataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaattatttaggtaaacaccatatgattg |
215 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4632216 |
acattattgtcatccattaagttcgaatccaaaactttgcttaagaattctaatccaattccactcataccaaattatttaggtaaacaccatttgattg |
4632117 |
T |
|
| Q |
216 |
tcattttgatgttgaaagttcaaacattattttctcatccaatatacacgtt-ccccctcaataaatgcaacttcttgcatgacaaacttcaacaaaaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4632116 |
tcattttgatgttgaaagttcaaacattattttcccatccaatatacacgtttccccctcaataaatgcaacttcttgcatggcaaacttcaacaaaaat |
4632017 |
T |
|
| Q |
315 |
tctttagctatggccaacctcctaaagaacatagttcctagtaaaatcaccctactgtctagtattttgtttctccttcatcttttgttgttccctctag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632016 |
tctttagctatggccaacctcctaaagaacatagttcctagtaaaatcaccctactgtctagtaatttgtttctccttcatcttttgttgttccctctag |
4631917 |
T |
|
| Q |
415 |
aggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4631916 |
aggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaa |
4631817 |
T |
|
| Q |
515 |
attattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgc |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4631816 |
attattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgc |
4631745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 131 - 584
Target Start/End: Complemental strand, 4668194 - 4667749
Alignment:
| Q |
131 |
ataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaatta-tttaggtaaacacc----atatgattgtcattttgat |
225 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| || ||| |||||||||| || ||||||| |||||||| |
|
|
| T |
4668194 |
ataaagttagaacccaaaactttgcttaaaaattctaa----attccact-ataccaaaataatttgggtaaacaccgtgtatttgattgtaattttgat |
4668100 |
T |
|
| Q |
226 |
gttgaaagttcaaacattattttctcatccaatatacacgttccccctcaataaatgcaacttcttgcatgacaaacttcaacaaaaattctttagctat |
325 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||| |
|
|
| T |
4668099 |
gttgaaagttggaacattattttcccgtccaata--cacgttccacctcaataaatgcaacttcttgcatggcatacttcgacaaaaattctctagttat |
4668002 |
T |
|
| Q |
326 |
ggccaacctcctaaagaacatagttcctagtaaaatcaccctactgtctagtattttgtttctccttcatcttttgttgttccctctagaggttaacagc |
425 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||| | |||||| ||||| | |||||||||| |
|
|
| T |
4668001 |
ggccaactccctaaagaacatagttcctagtgaaataaccttactgtctattactttgtttctccttcatctatcgttgtttcctctcgcggttaacagc |
4667902 |
T |
|
| Q |
426 |
ttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctcta |
525 |
Q |
| |
|
| |||||| ||||||| || |||||||| || | || ||||||||||||||||||||||| ||||||||||||| ||| | |||||| | |||||| |
|
|
| T |
4667901 |
tcatatgatgttttagctgtaaattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaactcttctctg |
4667802 |
T |
|
| Q |
526 |
tcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgat |
584 |
Q |
| |
|
||||||||||||||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
4667801 |
tcattgaaccacaaa------tcatatctgtaaaagccaaagctaatcctaactctgat |
4667749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 4638625 - 4638455
Alignment:
| Q |
20 |
ctatcgcatttgctaataacaaatttttgcgagaattgaccatcannnnnnn--atagaaagaattgttcatctttaatggagtctcttatttcaattac |
117 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4638625 |
ctatcgcattggctaataacaaatctttgtgagaatagaccatcatttttttttatagaaagaattgttcatctttaatggagtctctcattccaattac |
4638526 |
T |
|
| Q |
118 |
atttttgtcatccataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaa |
189 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4638525 |
attttcgtcatccataaagttcgaatccaaaactttgcttaagaattctaatccaattccact-ataccaaa |
4638455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 4668606 - 4668563
Alignment:
| Q |
73 |
tagaaagaattgttcatctttaatggagtctcttatttcaatta |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
4668606 |
tagaaagaattgttcatctttaatcgagtttcttattccaatta |
4668563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 402 - 584
Target Start/End: Original strand, 18924850 - 18925029
Alignment:
| Q |
402 |
ttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggaca |
501 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| |||||| ||||||||||||||| || ||||| | |||||||||||||| |||||||| |||| |
|
|
| T |
18924850 |
ttgttccctctagtggttaac---tcttatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgaca |
18924946 |
T |
|
| Q |
502 |
gggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgat |
584 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || ||| | | ||| ||||| ||||| | || |||||||||||| |
|
|
| T |
18924947 |
tggatgacaccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgat |
18925029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 18924760 - 18924819
Alignment:
| Q |
305 |
caacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcacc |
365 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
18924760 |
caacaaaaattctttaga-atggccaactacctaaagaacatagttcttactaaaatcacc |
18924819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University