View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18440_low_5 (Length: 518)

Name: NF18440_low_5
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18440_low_5
NF18440_low_5
[»] chr7 (10 HSPs)
chr7 (1-503)||(33416630-33417133)
chr7 (1-191)||(33424701-33424891)
chr7 (1-171)||(33410786-33410956)
chr7 (323-440)||(33411108-33411224)
chr7 (350-440)||(33425054-33425145)
chr7 (4-104)||(33436803-33436903)
chr7 (235-304)||(33427441-33427508)
chr7 (64-172)||(33427563-33427669)
chr7 (463-495)||(33425227-33425259)
chr7 (463-495)||(33411493-33411525)
[»] chr1 (2 HSPs)
chr1 (1-154)||(24984670-24984820)
chr1 (1-154)||(24990500-24990650)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 33416630 - 33417133
Alignment:
Q  1 tcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgca---attgcaactgatgaaagtaaaacca 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||   |||||||||||||||||||||||||    
T  33416630 tcttgagcccattgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatataatcagttgcagcaattgcaactgatgaaagtaaaacca 33416729  T
Q  98 tggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctctaattgtagaaattaacttcnnnnn 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  33416730 tggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctctaattgtagaaattaactt-aaaaa 33416828  T
Q  198 nntgagtgtcaagannnnnnnn-ctccctagaatataaaatctcaatcaaaagaatagctagctagcaaatgctgcgcaaatgttatttgttttgatttt 296  Q
      ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  33416829 aatgagtgtcaagatttttttttctccctagaatataaaatctcaatcaaaagaatagctagctagcaaatgctgcgcaaat---atttgttttgatttt 33416925  T
Q  297 gatgaattgtgcaattcttatatagatgtgtgtatatagattttttcaacacgacaataatagagtatatgtatgctattatattcggctaccggatttg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416926 gatgaattgtgcaattcttatatagatgtgtgtatatagattttatcgacacgacaataatagagtatatgtatgctattatattcggctaccggatttg 33417025  T
Q  397 gtcggcttttactaagacgaggttgaatttccacaactaattatattatcacttgaac-nnnnnnngagttttcttttgtttttatttaaccacgtggac 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         | | |||||||||||||||||||||||||||||    
T  33417026 gtcggcttttactaagacgaggttgaatttccacaactaattatattattacttgaacaaaaaaaaaaatattcttttgtttttatttaaccacgtggac 33417125  T
Q  496 tatctgtg 503  Q
    ||||||||    
T  33417126 tatctgtg 33417133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 33424701 - 33424891
Alignment:
Q  1 tcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatgg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33424701 tcttgagcccattgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatgg 33424800  T
Q  101 aaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctctaattgtagaaattaactt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  33424801 aaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgattttggaaaatatttctctctaaatgtagaaattaactt 33424891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 33410786 - 33410956
Alignment:
Q  1 tcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410786 tcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatgg 33410885  T
Q  101 aaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctct 171  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410886 aaatagaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctct 33410956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 33411108 - 33411224
Alignment:
Q  323 tgtgtgtatatagattttttcaacacgacaataatagagtatatgtatgctattatattcggctaccggatttggtcggcttttactaagacgaggttga 422  Q
    ||||||| ||| |||||| ||  ||| ||||||||||| ||| ||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  33411108 tgtgtgtgtattgattttatcgtcacaacaataatagaatatttgtttgctattataaacggctaccggatttggtcggc-tttactaagacgaggttga 33411206  T
Q  423 atttccacaactaattat 440  Q
    |||||||||||| |||||    
T  33411207 atttccacaacttattat 33411224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 33425054 - 33425145
Alignment:
Q  350 acaataatagagtatatgtatgctattatattcggctaccggatttggtcggc-ttttactaagacgaggttgaatttccacaactaattat 440  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  33425054 acaataatagaatatttgtttgctattataaacggctaccggatttggtcggctttttactaagacgaggttgaatttccacaacttattat 33425145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 33436803 - 33436903
Alignment:
Q  4 tgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaa 103  Q
    |||| ||||||||| || | ||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| |||||||| ||||    
T  33436803 tgagtccactgagtatagttaaaatcaacagtccaacccttgtcatcaccaacaatgtgatcggctgccattgcaactgaagaaagcaaaaccattgaaa 33436902  T
Q  104 t 104  Q
    |    
T  33436903 t 33436903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 33427508 - 33427441
Alignment:
Q  235 aatctcaatcaaaagaatagctagctagcaaatgctgcgcaaatgttatttgttttgattttgatgaatt 304  Q
    ||||||||| |||||||| ||||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  33427508 aatctcaatgaaaagaattgctagctagcaaatgcttcgaaaatgtta-ttgttttga-tttgatgaatt 33427441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 33427669 - 33427563
Alignment:
Q  64 tcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaat 163  Q
    ||||| || ||||||||||| |||| ||||||||| ||||| |  |||||||| |  ||||||||||   |||||||||||||||||  ||||| || ||    
T  33427669 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagc--ccatttgatcaaaatttaggtttgaaatat 33427572  T
Q  164 atttctctc 172  Q
    |||||||||    
T  33427571 atttctctc 33427563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 495
Target Start/End: Original strand, 33425227 - 33425259
Alignment:
Q  463 agttttcttttgtttttatttaaccacgtggac 495  Q
    |||||||||||||||||||||||||||||||||    
T  33425227 agttttcttttgtttttatttaaccacgtggac 33425259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 495
Target Start/End: Original strand, 33411493 - 33411525
Alignment:
Q  463 agttttcttttgtttttatttaaccacgtggac 495  Q
    ||||||| |||||||||||||||||||||||||    
T  33411493 agttttcatttgtttttatttaaccacgtggac 33411525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 24984820 - 24984670
Alignment:
Q  1 tcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatgg 100  Q
    ||||| ||||| |||||||| |  |||||||||||||||||||| |||||||| |||| |||||||| ||| ||||| ||||| ||||| ||||||||||    
T  24984820 tcttgggcccattgagtgtagttgaaatcaacggtccaacccttttcatcacccacaacgtgatcagctgccattgctactgaggaaagcaaaaccatgg 24984721  T
Q  101 aaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagt 154  Q
    |||||| ||||    | | | |||||||| ||| ||||| ||||||||||||||    
T  24984720 aaatggcaagg---tagattgcacgagaataagtcattttatcaaaatttgagt 24984670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 24990650 - 24990500
Alignment:
Q  1 tcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatgg 100  Q
    ||||| ||||| |||||||| |  |||||||||||||||||||| |||||||| |||| |||||||| ||| ||||| ||||| ||||| ||||||||||    
T  24990650 tcttgggcccattgagtgtagttgaaatcaacggtccaacccttttcatcacccacaacgtgatcagctgccattgctactgaggaaagcaaaaccatgg 24990551  T
Q  101 aaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagt 154  Q
    |||||| ||||    | | | |||||||| ||| ||||| ||||||||||||||    
T  24990550 aaatggcaagg---tagattgcacgagaataagtcattttatcaaaatttgagt 24990500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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