View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_low_6 (Length: 501)
Name: NF18440_low_6
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Complemental strand, 9399107 - 9398632
Alignment:
| Q |
9 |
aggagcagagacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgta |
108 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9399107 |
aggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgta |
9399008 |
T |
|
| Q |
109 |
gtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttccta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9399007 |
gtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttccta |
9398908 |
T |
|
| Q |
209 |
tggtcactagaagatgtgtcacacaatgcaaaattgaaaattatgtgatcccagaaaatagtttaatctttgtgaataattgggctatgggaagaaactc |
308 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398907 |
tggtcactagaagatgtgtcacgcaatgcaaaattgaaaattatgtgatcccagaaaatagtttaatctttgtgaataattgggctatgggaagaaactc |
9398808 |
T |
|
| Q |
309 |
agcttattgggacaaaccattggaatttaatccagaaagatttctaaaaaattcaacaaattccaatggggttattgacgtgaggggacaaaattttcag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
9398807 |
agcttattgggacaaaccattggaatttaatccagaaagatttctaaaaaattcaacaaattccaatggggttattgatgtgagggggcaaaattttcag |
9398708 |
T |
|
| Q |
409 |
attttgccatttgggtcaggaagaaggatgtgtcctggggttactttagcaatgcaagaagttccagctttgcttg |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398707 |
attttgccatttgggtcaggaagaaggatgtgtcctggggttactttagcaatgcaagaagttccagctttgcttg |
9398632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Complemental strand, 9381682 - 9381207
Alignment:
| Q |
9 |
aggagcagagacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgta |
108 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
9381682 |
aggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattattacaaaaagctcgtgaagaaatagacaatata |
9381583 |
T |
|
| Q |
109 |
gtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttccta |
208 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
9381582 |
gtagggaaaaatagactagtagatgaatctgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacccgtcccta |
9381483 |
T |
|
| Q |
209 |
tggtcactagaagatgtgtcacacaatgcaaaattgaaaattatgtgatcccagaaaatagtttaatctttgtgaataattgggctatgggaagaaactc |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
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| T |
9381482 |
tggtcactagaagatgtgtcacgcaatgtaaaattgaaaattatgtgatcccagaaaatagtttaatatttgtcaataattgggctatgggaagaaaccc |
9381383 |
T |
|
| Q |
309 |
agcttattgggacaaaccattggaatttaatccagaaagatttctaaaaaattcaacaaattccaatggggttattgacgtgaggggacaaaattttcag |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9381382 |
agcttattgggagaaaccattggaatttaatccagaaaggtttctaaaaaattcagcaaattccaatggggttattgacgtgaggggacaaaattttcag |
9381283 |
T |
|
| Q |
409 |
attttgccatttgggtcaggaagaaggatgtgtcctggggttactttagcaatgcaagaagttccagctttgcttg |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
9381282 |
attttgccatttgggtcaggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttg |
9381207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 23244287 - 23244545
Alignment:
| Q |
9 |
aggagcagagacaacatcaatttcaacagaatgggcattagttgagctaatgaacaa-cccttcattgttacaaaaagctcgtgaagaaatagacaatgt |
107 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||||||||||| || || || || || ||| || || | |||||||||||||||||||| ||||| | |
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| T |
23244287 |
aggaacagatacaacagcaatatcaacagaatgggcattagtagaactcataaaaaaacccatctttactccaaaaagctcgtgaagaaatcgacaacat |
23244386 |
T |
|
| Q |
108 |
agtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttcct |
207 |
Q |
| |
|
|||||| ||||||||| ||| || ||||| ||| ||||| | || ||| | ||||| || |||| ||||||||||||||| |||||||| |||||| |
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|
| T |
23244387 |
agtaggcaaaaacagaacagttgaagaatccgacatttcaaatatgccatatctacaagcaatcataagagaaacatttcgtcttcacccaccagttcct |
23244486 |
T |
|
| Q |
208 |
atggtcactagaagatgtgtcacacaatgcaaaattgaaaattatgtgatcccagaaaa |
266 |
Q |
| |
|
||||| || ||||||||||| || |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
23244487 |
atggttacaagaagatgtgtagcagaatgcaaagttgaaaactatgtgatcccagaaaa |
23244545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 484
Target Start/End: Original strand, 23244654 - 23244756
Alignment:
| Q |
382 |
attgacgtgaggggacaaaattttcagattttgccatttgggtcaggaagaaggatgtgtcctggggttactttagcaatgcaagaagttccagctttgc |
481 |
Q |
| |
|
||||| || ||||||||| ||||||| || | |||||||| || |||||||| ||||||||||| ||| | ||||| ||||||||||| ||||| |||| |
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| T |
23244654 |
attgatgttaggggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctggtgtttcgttagccatgcaagaagtgccagcattgc |
23244753 |
T |
|
| Q |
482 |
ttg |
484 |
Q |
| |
|
||| |
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|
| T |
23244754 |
ttg |
23244756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 23223371 - 23223331
Alignment:
| Q |
145 |
ccaaatcttccttatattcaagccataataaaagaaacatt |
185 |
Q |
| |
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||||| ||||||||||| |||||||| |||||||||||||| |
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|
| T |
23223371 |
ccaaaccttccttatatacaagccattataaaagaaacatt |
23223331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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