View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18440_low_7 (Length: 489)
Name: NF18440_low_7
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 7426027 - 7426430
Alignment:
| Q |
11 |
catcatcatcaattaatttgtttctaacttttcaagaataatggaataaaactgtgagtaagaa---tcactaaatcacacattaccacgattgacgatt |
107 |
Q |
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| T |
7426027 |
catcattatcaatttatttgtttttaacttttcaagaataatggaataaaactgtgagtaagaagaatcactaaatcacacattaccgcgagtgacgatt |
7426126 |
T |
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| Q |
108 |
agaagtatctactatctactggtgaaatatgataggggacatagtagagnnnnnnn---gaaggaatgtactagtagagttgaaaggattaaa---tctt |
201 |
Q |
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| T |
7426127 |
agaagtatctactatctactggtgaaatatgataggggacatagtagagttttttttttgaaggaatgtactagtagagttgaaaggattaaaaaatctt |
7426226 |
T |
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| Q |
202 |
catttttgagtcctacgatgatttcaatagaattactttcaatgaagttagagtgattgaaaaattattattagagttgattttcaggttattttttctt |
301 |
Q |
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| T |
7426227 |
catttttgagtcctacgatgatttcaatagaattactttcaatgaagttagaatgattgaaaaattattattagagttgatttgcaggttattatttctt |
7426326 |
T |
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| Q |
302 |
caagatgctaactagtgttatcaaggacacatgttaaaaaagtaattctttttgaagagttaattgtatagttttattcttattaagtaggttctacgtc |
401 |
Q |
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| T |
7426327 |
gaagatactaactattgttatcaaggacacatgttaaggaagtaattctttttgaagagttaattgtatagttttattcttattaagtaggttctacgtc |
7426426 |
T |
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| Q |
402 |
ctct |
405 |
Q |
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| T |
7426427 |
ctct |
7426430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 7426467 - 7426508
Alignment:
| Q |
429 |
tttgacgctatgaattttgaataaactcttacatgtgttggg |
470 |
Q |
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| T |
7426467 |
tttgacgctatgaattttgaataaactcttacatgtgttggg |
7426508 |
T |
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