View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18440_low_8 (Length: 406)
Name: NF18440_low_8
Description: NF18440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18440_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 34851889 - 34851510
Alignment:
| Q |
8 |
gagtagcaaaggcataatactaatgatagtggccatattttaatatctagtttttaattatgaaaacttttcttagccaaaataaattaaattatggttc |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851889 |
gagtaacaaagacataatactaatgatagtggccattttttaatatctagtttttaattatgaaaacttttcttagccaaaataaattaaattatggttc |
34851790 |
T |
|
| Q |
108 |
ctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851789 |
ctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaat |
34851690 |
T |
|
| Q |
208 |
aataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851689 |
aataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttat |
34851590 |
T |
|
| Q |
308 |
taagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataataaatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851589 |
taagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataataaatt |
34851510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 3651160 - 3651239
Alignment:
| Q |
115 |
taccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaac |
194 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| | ||||||||||||||| ||||||||| |||| ||| |||||||||| |
|
|
| T |
3651160 |
taccttgccaccagtcgcctcttgaagcgctgtttgaattgttaccattgagatcaccattattcgtatatttcttgaac |
3651239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 3511696 - 3511627
Alignment:
| Q |
319 |
caaacatttcattagatctcatcatttacaagatatttgaatat-ttttctaggaaggatataataaatt |
387 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
3511696 |
caaacatttaattagatctcaccatttataagatgtttgtatatgttttctaggaaggatataataaatt |
3511627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 3512626 - 3512532
Alignment:
| Q |
112 |
tcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaa |
206 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||| | | |||||||| |||| ||||| ||| || | |||||||||| |||| |||| ||||| |
|
|
| T |
3512626 |
tcctacctagccaccagtctccccttgaagcactgttaggattgttacaattgagatcagcattatccgtatctttcttaaactacaaaggtgaa |
3512532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University