View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18441_high_2 (Length: 520)
Name: NF18441_high_2
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18441_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Complemental strand, 36388751 - 36388267
Alignment:
| Q |
19 |
gtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaaga |
118 |
Q |
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| T |
36388751 |
gtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaaga |
36388652 |
T |
|
| Q |
119 |
tttcaatcaactaacacattttaaagggtatatttctttttggctctaaataaaaacttagattatgcattttgcttgtcttgcacgtgtaatgttgacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388651 |
tttcaatcaactaacacattttaaagggtatatttctttttggctctaaataaaaacttagattatgcattttgcttgtcttgcacgtgtaatgttgacc |
36388552 |
T |
|
| Q |
219 |
caaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaagacattgatataccata |
318 |
Q |
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| T |
36388551 |
caaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaagacattgatataccata |
36388452 |
T |
|
| Q |
319 |
tggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacactaaacaaactaatatatgacactttctttaagtcagaatgattgcaact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388451 |
tggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacattaaacaaactaatatatgacactttctttaagtcagaatgattgcaact |
36388352 |
T |
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| Q |
419 |
agtaattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctccct |
503 |
Q |
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| T |
36388351 |
agtaattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctccct |
36388267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 36434667 - 36434425
Alignment:
| Q |
19 |
gtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaaga |
118 |
Q |
| |
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|||||||||||||| || |||| ||||||| |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||| |
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| T |
36434667 |
gtgtgttgctttgaacaccgttcttttctccaaaggaatcttggtttaattgccgcaccattttat------ctgaagttacaaatggcatgaggtaaga |
36434574 |
T |
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| Q |
119 |
tttcaatcaactaacacattttaaagggtatatttctttttggctct-aaataaaaacttagattatgcattttgcttgtcttgcacgtgtaatgttgac |
217 |
Q |
| |
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|||||||||||| | ||||||| |||||| ||||||||||||||||| ||| | || |||||||||| ||||||||| | || |||| |||||| | | |
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| T |
36434573 |
tttcaatcaacttaaacattttgaagggtgtatttctttttggctctcaaaaagaatcttagattatacattttgctagatttacacgcgtaatgatctc |
36434474 |
T |
|
| Q |
218 |
ccaaaaataataatattacagttattcaatcaaaacttagacattattagc |
268 |
Q |
| |
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|| ||||||| |||||| ||||||| ||||||||||||| |||||||| |
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| T |
36434473 |
tcattaataata--attacaattattcagtcaaaacttagactttattagc |
36434425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 36375032 - 36374890
Alignment:
| Q |
19 |
gtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaaga |
118 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||||||| |
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| T |
36375032 |
gtgtgttgctttgagcaccattctcttcttcagaggaatcttggttaaattgccgcatcattttat------ctgaagttacaaatggcacgaggtaaga |
36374939 |
T |
|
| Q |
119 |
tttcaatcaactaacacattttaaagggtatatttctttttggctctaa |
167 |
Q |
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|||||||||||| || ||||| | ||||||||||||||||||||||| |
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| T |
36374938 |
tttcaatcaacttgcaaattttgataggtatatttctttttggctctaa |
36374890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 36428138 - 36427950
Alignment:
| Q |
19 |
gtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaaga |
118 |
Q |
| |
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||||||||||||| | | ||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||||||||||| ||| |||||||| |
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| T |
36428138 |
gtgtgttgctttgggtatcattctcttccccagaggaatcttggtttggttgcggcatcattttat------ctgaagttacaaatgacataaggtaaga |
36428045 |
T |
|
| Q |
119 |
tttcaatcaactaacacatttt-aaagggtatatttctttttggctct-aaataaaaacttagattatgcattttgcttgtcttgcacgtgtaat |
211 |
Q |
| |
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|||||||||||| | ||||||| | | ||||||||||||||||||||| ||| |||| |||| ||| | |||||| || || ||| ||||||||| |
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| T |
36428044 |
tttcaatcaacttaaacattttgataaggtatatttctttttggctctcaaaaaaaatcttatattttacatttttctagtgttgtacgtgtaat |
36427950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 36418156 - 36418021
Alignment:
| Q |
21 |
gtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaagatt |
120 |
Q |
| |
|
||||||||||| | | ||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||||||||||| ||| |||||||||| |
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| T |
36418156 |
gtgttgctttgggtatcattctcttccccagaggaatcttggtttggttgcggcatcattttat------ctgaagttacaaatgacataaggtaagatt |
36418063 |
T |
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| Q |
121 |
tcaatcaactaacacatttt-aaagggtatatttctttttgg |
161 |
Q |
| |
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|||||||||| | ||||||| | | ||||||||||||||||| |
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| T |
36418062 |
tcaatcaacttaaacattttgataaggtatatttctttttgg |
36418021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 36388226 - 36388194
Alignment:
| Q |
436 |
acaattgcaattatagaagctacaagaattgca |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
36388226 |
acaattgcaattatagaagctacaagaattgca |
36388194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 36374607 - 36374561
Alignment:
| Q |
313 |
accatatggcacaaaatccatgcaatagttgaacaccacaaaaagaa |
359 |
Q |
| |
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||||||| ||||| | |||||| |||||||||||||||||||||||| |
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| T |
36374607 |
accatattgcacacagtccatgtaatagttgaacaccacaaaaagaa |
36374561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 36412262 - 36412230
Alignment:
| Q |
436 |
acaattgcaattatagaagctacaagaattgca |
468 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
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|
| T |
36412262 |
acaattgcaactatagaagctacaagaattgca |
36412230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 36417593 - 36417561
Alignment:
| Q |
436 |
acaattgcaattatagaagctacaagaattgca |
468 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
36417593 |
acaattgcaactatagaagctacaagaattgca |
36417561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 36426421 - 36426389
Alignment:
| Q |
436 |
acaattgcaattatagaagctacaagaattgca |
468 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
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|
| T |
36426421 |
acaattgcaactatagaagctacaagaattgca |
36426389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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