View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18441_high_4 (Length: 407)
Name: NF18441_high_4
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18441_high_4 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 32958852 - 32958474
Alignment:
| Q |
19 |
gagatgcgtcacaatttctgtcgagcaacatgtttggtttcctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcttatggt |
118 |
Q |
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| T |
32958852 |
gagatgcgtcacaatttctgtcgagcaacatgtttggtttcctgtcatggttttagagtgttagtttcaggctgttgtgactgctagtttggcttatggt |
32958753 |
T |
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| Q |
119 |
ttctgcgagttggtgtgtacataggcttagagatttattttctgttggtgctaatgatgcattggaattcggtcatgacagtttttatgtgctttcctgc |
218 |
Q |
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| T |
32958752 |
ttctgcgagctggtgtgtacataggcttagagatttattttcttttggtgctaatgatgtattggaattcggtcatgacagtttttatgtgctttcttgc |
32958653 |
T |
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| Q |
219 |
acttaccgttatttactctaaacaaaccaccacaaccatctcgaccaccatccttactcgtaccatccgtattcaacaatctcattcactcgtattccaa |
318 |
Q |
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| T |
32958652 |
acttaccgttatttactctaaacaaaccaccacaaacatctcgaccaccatccttactcgtaccatccgtattcaacaatctcattcactcgtattccaa |
32958553 |
T |
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| Q |
319 |
tctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaacaactatataaatatgatgatattgccttctctg |
397 |
Q |
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| T |
32958552 |
tctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaacaactatatatatatgatgatattgccttctctg |
32958474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 29142931 - 29143007
Alignment:
| Q |
60 |
ctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcttatggtttctgcgagttggtgtgt |
136 |
Q |
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| T |
29142931 |
ctgtcatggttttgcagtggtaatttcggactgttctgactgctagtttggcttctggtttctgcgagctggtgtgt |
29143007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 287 - 395
Target Start/End: Original strand, 38473 - 38579
Alignment:
| Q |
287 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaacaactatataaatatgatgatat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | |||| | |||||||||| |
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| T |
38473 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaacaacagc--tatagacatgatgatat |
38570 |
T |
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| Q |
387 |
tgccttctc |
395 |
Q |
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| T |
38571 |
tgccttctc |
38579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 49729827 - 49729865
Alignment:
| Q |
19 |
gagatgcgtcacaatttctgtcgagcaacatgtttggtt |
57 |
Q |
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| T |
49729827 |
gagatgcgtcacaatttccatcgagcaacatgtttggtt |
49729865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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