View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18441_low_1 (Length: 554)
Name: NF18441_low_1
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18441_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 37497432 - 37496893
Alignment:
| Q |
1 |
ctgcaaatgaacacaacccagataagtaaaacaccnnnnnnnngaaactttagcataacattaactactaaattaacaagttatggaaaatcatagaaga |
100 |
Q |
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| T |
37497432 |
ctgcaaatgaacacaacccagataagtaaaacaccaaaaaaaagaaactttagcataacattaactactaaattaacaagttatggaaaatcatagaaga |
37497333 |
T |
|
| Q |
101 |
atagaagcatacttccacagataaatcgtcgaaaacattttaagactgaagaagggaaatgatctttgtgtgtattgggtttgtttacaagaggaagagt |
200 |
Q |
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| T |
37497332 |
atagaagcatacttccacagataaatcgtcgaaaacattttaagactgaagaagggaaatgatctttgtgtgtattgggtttgtttacaagaggaagagt |
37497233 |
T |
|
| Q |
201 |
gtagtgatggccattattagcagagaaaagggtggaaactttgattcttcccatagaaggattgaaaaaataatgggataggaagaaatgttgcatgcat |
300 |
Q |
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| T |
37497232 |
gtagtgatggccattattagcagagaaaagggtggaaactttgattcttcccatagaaggattgaaaaaataatgggataggaagaaatgttgcatgcat |
37497133 |
T |
|
| Q |
301 |
gatatgatacataatttaggaaaaagagagaagctagttgttgaaaatggaaatttgaatggaaggtaaagaacnnnnnnngaagagattattacattta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
37497132 |
gatatgatacataatttaggaaaaagagagaagctagtagttgaaaatggaaatttgaatggaaggtaaagaacaaaaaaagaagagattattgcatttt |
37497033 |
T |
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| Q |
401 |
ttttagtttgttgatctttagttagtaacttctcttgcatggctctaactaccataccactgactgaccgttaaggtggactgcttcttacttgaaccat |
500 |
Q |
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| T |
37497032 |
ttttagtttgttgatctttagttagtaacttctcttgcattgctctaactaccataccactgactgaccgttaaggtggactgcttcttacttgaaccat |
37496933 |
T |
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| Q |
501 |
aatccacacttcattgagtaaagttagttaatgtcttttt |
540 |
Q |
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| T |
37496932 |
aatccacacttcattgagtaaagttagttaatgacttttt |
37496893 |
T |
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