View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18441_low_11 (Length: 242)
Name: NF18441_low_11
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18441_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 38927945 - 38928030
Alignment:
| Q |
158 |
atgaaggagaatgtctaaagattgtttgagtaaaaagcaattgttttggagacatactt-aaaaaattgattagtaaattctttga |
242 |
Q |
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| T |
38927945 |
atgaaggagaatgtctaaagattgtttgagtaaaaagcaattgttttggagacatacttaaaaaaattgattagtaaattctttga |
38928030 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38927785 - 38927879
Alignment:
| Q |
1 |
cataggccataaatttctcgaccaaagccataagtagcagtttaacaccgtagaggtggtgtatattgaccttgttcttgtagttgggaagtctt |
95 |
Q |
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| T |
38927785 |
cataggccataaatttctcgaccaaagccataagtagcagtttaacaccgtagaggtggtgtatattgacgatgttcctgtggtgtggaagtctt |
38927879 |
T |
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