View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18441_low_3 (Length: 469)

Name: NF18441_low_3
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18441_low_3
NF18441_low_3
[»] chr1 (9 HSPs)
chr1 (48-265)||(43561864-43562085)
chr1 (310-460)||(43566149-43566299)
chr1 (310-460)||(43473948-43474098)
chr1 (109-172)||(47364017-47364079)
chr1 (107-155)||(14758627-14758675)
chr1 (109-147)||(48947274-48947312)
chr1 (110-155)||(42469317-42469362)
chr1 (121-153)||(31889246-31889278)
chr1 (107-155)||(44584040-44584088)
[»] chr3 (3 HSPs)
chr3 (109-177)||(1600521-1600589)
chr3 (118-172)||(24832302-24832356)
chr3 (109-154)||(26143168-26143214)
[»] scaffold0268 (1 HSPs)
scaffold0268 (109-159)||(20234-20284)
[»] chr5 (1 HSPs)
chr5 (109-153)||(5758632-5758676)
[»] chr8 (3 HSPs)
chr8 (87-150)||(41646597-41646660)
chr8 (108-154)||(23984323-23984369)
chr8 (109-179)||(39691080-39691150)
[»] chr4 (2 HSPs)
chr4 (107-153)||(19652701-19652747)
chr4 (109-153)||(41370160-41370204)
[»] chr7 (2 HSPs)
chr7 (98-155)||(6771896-6771953)
chr7 (107-155)||(20397459-20397507)
[»] chr2 (2 HSPs)
chr2 (96-153)||(21004768-21004825)
chr2 (110-147)||(42342488-42342525)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 43561864 - 43562085
Alignment:
Q  48 aaggattacaaattaaaaaagtattcattnnnnnnnncatcaatttttattatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaa 147  Q
    |||||||||||||||||||||||||||||         |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43561864 aaggattacaaattaaaaaagtattcattaaaaaaaaaatcaatttctattatatagagtgcacaaattttcataaaaacttaccatttaagatccttaa 43561963  T
Q  148 agagtgtcatgagacacttgttagcgttttccatgttttcta----tacgagggtgtaaacacttgtggtgcaaaacacacccattggggtttgaactga 243  Q
    | |||||||||||||||| ||||| ||||||| |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43561964 aaagtgtcatgagacactcgttagtgttttccttgttttctatacgtacgagggtgtaaacacttgtggtgcaaaacacacccattggggtttgaactga 43562063  T
Q  244 tgactaacatcacacattccaa 265  Q
    ||||||||||||||||||||||    
T  43562064 tgactaacatcacacattccaa 43562085  T

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Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 310 - 460
Target Start/End: Original strand, 43566149 - 43566299
Alignment:
Q  310 ggaacggcgccgatgctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43566149 ggaacggcgccgatgctttcgaccagaattccatgcaaatccactattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt 43566248  T
Q  410 ttctcttgttcttcaagagagaaatcatgtaacttcattctgtattcatct 460  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  43566249 ttctcttgttcttcaagggagaaatcatttaacttcattctgtattcatct 43566299  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 310 - 460
Target Start/End: Complemental strand, 43474098 - 43473948
Alignment:
Q  310 ggaacggcgccgatgctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt 409  Q
    |||||||||| || ||||| |||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43474098 ggaacggcgcagacgcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtctaaggcgatgaagttgaaaacggtttgt 43473999  T
Q  410 ttctcttgttcttcaagagagaaatcatgtaacttcattctgtattcatct 460  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  43473998 ttctcttcttcttcaagagagaaatcatgtaacttcattctatattcatct 43473948  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 47364079 - 47364017
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagc 172  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||| | | ||||||||||||    
T  47364079 cacaaattttcataaaaatttatcatttaaaattcttaaagagtgtcct-aaacacttgttagc 47364017  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 14758627 - 14758675
Alignment:
Q  107 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 155  Q
    ||||||| |||||||||||| |||| ||||||| |||||||||||||||    
T  14758627 tgcacaatttttcataaaaatttactatttaaagtccttaaagagtgtc 14758675  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 48947274 - 48947312
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaa 147  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  48947274 cacaaattttcataaaaagttaccatttaaagtccttaa 48947312  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 42469317 - 42469362
Alignment:
Q  110 acaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 155  Q
    |||||||||||||||| ||||||||| || ||||||||| ||||||    
T  42469317 acaaattttcataaaatcttaccattaaagatccttaaaaagtgtc 42469362  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 31889246 - 31889278
Alignment:
Q  121 taaaaacttaccatttaaaatccttaaagagtg 153  Q
    ||||||||||||||||||||| |||||||||||    
T  31889246 taaaaacttaccatttaaaatgcttaaagagtg 31889278  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 44584088 - 44584040
Alignment:
Q  107 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 155  Q
    ||||||| ||||||||||||||||| || ||||||| |||| |||||||    
T  44584088 tgcacaagttttcataaaaacttactatctaaaatctttaatgagtgtc 44584040  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 1600589 - 1600521
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagcgtttt 177  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||| ||| | ||| |||||||||||    
T  1600589 cacaaattttcataaaagtttaccatttaagatccttaaagagtgtcctgaaatactcgttagcgtttt 1600521  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 24832356 - 24832302
Alignment:
Q  118 tcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagc 172  Q
    ||||||||| |||| |||||||||| |||||||||||||||| | | ||||||||    
T  24832356 tcataaaaatttactatttaaaatctttaaagagtgtcatgatatatttgttagc 24832302  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 26143168 - 26143214
Alignment:
Q  109 cacaaattttcat-aaaaacttaccatttaaaatccttaaagagtgt 154  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||    
T  26143168 cacaaattttcattaaaaacttaccatttaaaatgtttaaagagtgt 26143214  T

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Target: scaffold0268 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 20284 - 20234
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatga 159  Q
    ||||| |||||||||||||||| |||||||| | |||||||||||||||||    
T  20284 cacaacttttcataaaaacttatcatttaaagtgcttaaagagtgtcatga 20234  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 5758632 - 5758676
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaaagagtg 153  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  5758632 cacaaactttcataaaaacttaccatttaaagtccttaaaaagtg 5758676  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 41646597 - 41646660
Alignment:
Q  87 tcaatttttattatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaaga 150  Q
    ||||||||||||  || || ||||||| ||||||||||||||||| || |||| ||||||||||    
T  41646597 tcaatttttattgaattgaatgcacaagttttcataaaaacttactatctaaagtccttaaaga 41646660  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 23984323 - 23984369
Alignment:
Q  108 gcacaaattttcataaaaacttaccatttaaaatccttaaagagtgt 154  Q
    |||||| |||||||||||| |||| ||||||||||||||| ||||||    
T  23984323 gcacaatttttcataaaaatttactatttaaaatccttaaggagtgt 23984369  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 39691150 - 39691080
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaaagagtgtcatgagacacttgttagcgttttcc 179  Q
    |||||||||||||||||| |||| |||||| ||||||||||| |  |  ||||||||||||| | ||||||    
T  39691150 cacaaattttcataaaaaattactatttaagatccttaaagaatacccggagacacttgttaacattttcc 39691080  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 19652701 - 19652747
Alignment:
Q  107 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtg 153  Q
    ||||||||||||||||||||||||| || ||||||  ||||||||||    
T  19652701 tgcacaaattttcataaaaacttactatctaaaatatttaaagagtg 19652747  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 41370204 - 41370160
Alignment:
Q  109 cacaaattttcataaaaacttaccatttaaaatccttaaagagtg 153  Q
    ||||||||||||||||||||||| ||| ||| |||||||| ||||    
T  41370204 cacaaattttcataaaaacttactattcaaagtccttaaaaagtg 41370160  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 6771896 - 6771953
Alignment:
Q  98 tatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 155  Q
    ||||| || ||||||| ||| |||||||| |||| ||||||| |||||||||||||||    
T  6771896 tatattgaatgcacaattttccataaaaatttactatttaaagtccttaaagagtgtc 6771953  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 20397507 - 20397459
Alignment:
Q  107 tgcacaaattttcataaaaacttaccatttaaaatccttaaagagtgtc 155  Q
    |||||| ||||||||||||  |||| |||| ||||||||||||||||||    
T  20397507 tgcacacattttcataaaatattactattttaaatccttaaagagtgtc 20397459  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 21004768 - 21004825
Alignment:
Q  96 attatatagagtgcacaaattttcataaaaacttaccatttaaaatccttaaagagtg 153  Q
    ||||||| || | |||||||||||| ||||| |||||||||||||  |||||||||||    
T  21004768 attatattgattacacaaattttcaaaaaaaattaccatttaaaagtcttaaagagtg 21004825  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 42342525 - 42342488
Alignment:
Q  110 acaaattttcataaaaacttaccatttaaaatccttaa 147  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  42342525 acaaattttcataaaaagttaccatttaatatccttaa 42342488  T

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