View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18441_low_5 (Length: 372)
Name: NF18441_low_5
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18441_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 25813407 - 25813751
Alignment:
| Q |
18 |
ctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcgtcgtaaccagccttgtagtacttgtttaaggtctctagggttacacc |
117 |
Q |
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| T |
25813407 |
ctagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcgtcgtaaccagccttgtagtacttgtttatggtctctagggttacacc |
25813506 |
T |
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| Q |
118 |
cggagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcgtcgacgcatagaaatatatgataaatgtggtaagtaa |
217 |
Q |
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| T |
25813507 |
tggagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg---acgcatagaaatatatgataaatgtggtaagtaa |
25813603 |
T |
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| Q |
218 |
agtatcaatttgaaacatataatgtgtggattattatgaaaaaatgtacaaatattatatgtattaaccttgctgttaggaagcttataacatcaactgt |
317 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813604 |
agtatcaatttgaaacatatgatgtatggattattatgaaaaaatgtacaaatagtatatgtattaaccttgctgttaggaagcttataacatcaactgt |
25813703 |
T |
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| Q |
318 |
ttgctgaatattttcatctgattgtccccattcttgcgattcatctct |
365 |
Q |
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| T |
25813704 |
ttgctgaatattttcatctgattgtccccattcttgtgatccatctct |
25813751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 25759272 - 25759103
Alignment:
| Q |
18 |
ctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcgtcgtaaccagcctt-----gtagtacttgtttaaggtctctagggtt |
112 |
Q |
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| T |
25759272 |
ctagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcgccgtaaccagccttagcttgtagtacttgtttaaggtctctagggtt |
25759173 |
T |
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| Q |
113 |
acacccggagagagag--gttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg |
180 |
Q |
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| T |
25759172 |
acacttggagagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg |
25759103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 25788489 - 25788642
Alignment:
| Q |
19 |
tagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcgtcgtaaccagccttgtagtacttgtttaaggtctctagggttacaccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25788489 |
tagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcgtagtaaccagccttgtagtacttgtttatggtctctagggttacacct |
25788588 |
T |
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| Q |
119 |
ggagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacct |
177 |
Q |
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| T |
25788589 |
ggagagagaggttcgtttaagagttca-----atatagactagggttttttgtatacct |
25788642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12405470 - 12405522
Alignment:
| Q |
18 |
ctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcg |
70 |
Q |
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| T |
12405470 |
ctagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcg |
12405522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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