View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18441_low_6 (Length: 312)
Name: NF18441_low_6
Description: NF18441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18441_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 15020258 - 15020515
Alignment:
| Q |
1 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020258 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
15020357 |
T |
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| Q |
101 |
gcgggatttgcatctccatgctgagcataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgag |
200 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020358 |
gcgtgatttgcatctccatactgagcataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgag |
15020457 |
T |
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| Q |
201 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatccccgccaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020458 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatccccgccaa |
15020515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 15027376 - 15027633
Alignment:
| Q |
1 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15027376 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
15027475 |
T |
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| Q |
101 |
gcgggatttgcatctccatgctgagcataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgag |
200 |
Q |
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| T |
15027476 |
gcgtgatttgcatctccatactgagcataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgag |
15027575 |
T |
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| Q |
201 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatccccgccaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15027576 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatccccgccaa |
15027633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 15006141 - 15006398
Alignment:
| Q |
1 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
100 |
Q |
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||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15006141 |
tgctgacaaacgagcacaagacatgagaacacaagatatagtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
15006240 |
T |
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| Q |
101 |
gcgggatttgcatctccatgctgagcataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgag |
200 |
Q |
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|| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
15006241 |
gcatgatttgcatcaccatactgagcataacctccaatcatcacagtccaagtcaccacatccctatctttaggacatatttcatcaaacatagcacgag |
15006340 |
T |
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| Q |
201 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatccccgccaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15006341 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatcaccgccaa |
15006398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 15045501 - 15045758
Alignment:
| Q |
1 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
100 |
Q |
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||||| |||||||||||| | |||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
15045501 |
tgctgacaaacgagcacaggacatgagcacacaagatatagtaaaatcattaggaactatgcagttatcaattttaaacatttcagagaaaagttgcagg |
15045600 |
T |
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| Q |
101 |
gcgggatttgcatctccatgctgagcataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgag |
200 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
15045601 |
gcatgatttgcatcaccatgctgagcataacctccaatcatcacagtccaagtcaccacatccctatctttaggacatatttcatcaaacatagcacgag |
15045700 |
T |
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| Q |
201 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatccccgccaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15045701 |
ccacttctaaactcttgcatttagcatacatatcaattagagcattaatcaccgccaa |
15045758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 15005689 - 15005802
Alignment:
| Q |
1 |
tgctgccaaacgagcacaagccatgagtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagg |
100 |
Q |
| |
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||||| |||||||||||| | |||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
15005689 |
tgctgacaaacgagcacaggacatgagcacacaagatatagtaaaatcattaggaactatgcagttatcaattttaaacatttcagagaaaagttgcagg |
15005788 |
T |
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| Q |
101 |
gcgggatttgcatc |
114 |
Q |
| |
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|| |||||||||| |
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| T |
15005789 |
gcatgatttgcatc |
15005802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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